PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462875385

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 441aa MW: 49952.7 Da PI: 10.0636

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462875385	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.3	2.8e-18	79	166	1	96
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkv+ p+ +++ rl +p +f ++ +++++++ ++l+ +sg++W+ l + + ++ +t+GWkeFv ++ L++g f+vF++dg+sef+ v v 462875385 79 FFKVFFPEQSGE--RLKIPQPFW-KYlKEEPTRP--ISLKGPSGNTWQAML--TSGEEGLGFTQGWKEFVGDHSLQQGHFLVFTYDGHSEFSVV--V 166 899998877776..59****9.5547777776..***********..999999**************************9999443..3 PP
2	B3	52.7	7.8e-17	336	427	3	98
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +v++ s+v + +p +fa+e + ++ k++tl d++g+ Wev++ y ++ +++GW +F+ n+L+ D++vF+l + e + +v+++r 462875385 336 QVMMESYVYVGFFMNIPCEFAREWL-P-RTCKKMTLWDPQGKPWEVQYVYYSERSVAAFSGGWGKFAVGNNLEKFDVCVFELLK--ENNIKVHIYR 427 68999**************9995.3.4568************9988888899*********************886..4455888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	1.40E-17	77	168	No hit	No description
Gene3D	G3DSA:2.40.330.10	3.3E-22	77	171	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.62	77	170	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.34E-21	77	171	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.3E-16	79	166	IPR003340	B3 DNA binding domain
SMART	SM01019	3.0E-15	79	171	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.6E-25	325	427	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.51E-23	327	427	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.98E-25	332	427	No hit	No description
PROSITE profile	PS50863	13.338	334	429	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-13	334	429	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.5E-15	336	427	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MARENQQQQG ISSAAAAAKE RSMRKGKESG MEKQKEKGAE ERMEKGTEKG KYNGREGRKE 60 QKGRGEAKKR DAVGAGRHFF KVFFPEQSGE RLKIPQPFWK YLKEEPTRPI SLKGPSGNTW 120 QAMLTSGEEG LGFTQGWKEF VGDHSLQQGH FLVFTYDGHS EFSVVVFCKS GVEDESALDA 180 QPSKERVVKA EEEKGAQDTD VAGASEREAS ALPSVEDNGK TRKRVRQGMV NSSVPKRQCV 240 QKKPENRRPE AFIDTSKAGS TVPDSNKDLS CMLDEYSSFN KSGTRLKDVP RVGKAVSKKS 300 RQPVVISQRR RITEEEKGHA LKRAKEFKSK NPFTLQVMME SYVYVGFFMN IPCEFAREWL 360 PRTCKKMTLW DPQGKPWEVQ YVYYSERSVA AFSGGWGKFA VGNNLEKFDV CVFELLKENN 420 IKVHIYRVVP DVTPLLRNRS M

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MARENQQQQG ISSAAAAAKE RSMRKGKESG MEKQKEKGAE ERMEKGTEKG KYNGREGRKE  60
QKGRGEAKKR DAVGAGRHFF KVFFPEQSGE RLKIPQPFWK YLKEEPTRPI SLKGPSGNTW  120
QAMLTSGEEG LGFTQGWKEF VGDHSLQQGH FLVFTYDGHS EFSVVVFCKS GVEDESALDA  180
QPSKERVVKA EEEKGAQDTD VAGASEREAS ALPSVEDNGK TRKRVRQGMV NSSVPKRQCV  240
QKKPENRRPE AFIDTSKAGS TVPDSNKDLS CMLDEYSSFN KSGTRLKDVP RVGKAVSKKS  300
RQPVVISQRR RITEEEKGHA LKRAKEFKSK NPFTLQVMME SYVYVGFFMN IPCEFAREWL  360
PRTCKKMTLW DPQGKPWEVQ YVYYSERSVA AFSGGWGKFA VGNNLEKFDV CVFELLKENN  420
IKVHIYRVVP DVTPLLRNRS M

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	1e-14	307	428	22	142	B3 domain-containing transcription factor VRN1
4i1k_B	1e-14	307	428	22	142	B3 domain-containing transcription factor VRN1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462875385

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827675.1	1e-166	B3 domain-containing protein Os11g0197600-like
Refseq	XP_025827676.1	1e-166	B3 domain-containing protein Os11g0197600-like
Swissprot	Q2R9D2	1e-128	Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBL	A0A0A9DCS3	1e-167	A0A0A9DCS3_ARUDO; Uncharacterized protein
STRING	Pavir.Ha01581.1.p	1e-155	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4461	37	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	9e-33	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]