PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462875202
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 209aa    MW: 23283.8 Da    PI: 5.8548
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462875202genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1133.1e-3571241128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGf+F P+de+lvv++L++kv++ +++  ++i++v +  ++Pw+L+ k+ +  ++wyfFs++++         r+ +sgyW+  g d++++s +g ++
  462875202   7 LPPGFHFFPSDEDLVVHFLRRKVANLPCRP-DIIPTVLLQCCDPWELNGKALQAANQWYFFSHAAQ--------GRTSASGYWNPVGADETITS-SGCTI 96 
                79*************************999.99**************966667789******9855........577889**************.999** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                glkktL+fy+g+  kg kt+Wvmhey+l
  462875202  97 GLKKTLIFYTGDPFKGFKTNWVMHEYHL 124
                **************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-464167IPR003441NAC domain
PROSITE profilePS5100541.8687168IPR003441NAC domain
PfamPF023657.6E-238124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEGSTNLPPG FHFFPSDEDL VVHFLRRKVA NLPCRPDIIP TVLLQCCDPW ELNGKALQAA  60
NQWYFFSHAA QGRTSASGYW NPVGADETIT SSGCTIGLKK TLIFYTGDPF KGFKTNWVMH  120
EYHLLDGGYN VCGSSTSSSS NSSRKSQRKR LHSSTASSNW VICRVFESNF GAQVSFHDEG  180
TELSCLDEVF LSLDDYDEVS LPNNYNSSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-36617316170NO APICAL MERISTEM PROTEIN
1ut4_B6e-36617316170NO APICAL MERISTEM PROTEIN
1ut7_A6e-36617316170NO APICAL MERISTEM PROTEIN
1ut7_B6e-36617316170NO APICAL MERISTEM PROTEIN
3swm_A6e-36617319173NAC domain-containing protein 19
3swm_B6e-36617319173NAC domain-containing protein 19
3swm_C6e-36617319173NAC domain-containing protein 19
3swm_D6e-36617319173NAC domain-containing protein 19
3swp_A6e-36617319173NAC domain-containing protein 19
3swp_B6e-36617319173NAC domain-containing protein 19
3swp_C6e-36617319173NAC domain-containing protein 19
3swp_D6e-36617319173NAC domain-containing protein 19
4dul_A6e-36617316170NAC domain-containing protein 19
4dul_B6e-36617316170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462875202
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314570.11e-122NAC domain-containing protein 104 isoform X2
SwissprotQ8GWK62e-58NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0A9FYS51e-124A0A0A9FYS5_ARUDO; Uncharacterized protein
STRINGPavir.Aa01694.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-59xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]