PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462874329 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 27619.8 Da PI: 10.7192 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.8e-17 | 42 | 86 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+ Ed +l+d vk +G ++Wk Iar+++ gR +kqc++rw ++l 462874329 42 PWTKAEDSILKDMVKHHGVHNWKVIARYLP-GRVGKQCRERWINHL 86 8*****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 42.7 | 1.3e-13 | 95 | 133 | 3 | 43 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 WT+++d+ l++a+ +G++ W+ Ia +++ gR+++ +k++ 462874329 95 FWTEDDDKMLIEAHIYHGNR-WSVIAGHLP-GRSENAIKNH 133 5*******************.*********.*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.878 | 35 | 90 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-15 | 39 | 88 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.62E-29 | 40 | 133 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-15 | 41 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-22 | 42 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.30E-16 | 42 | 86 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-16 | 89 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.333 | 91 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-9 | 92 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-11 | 96 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.68E-10 | 96 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MPSRALGVTD ISVVSGIPNK LMTAWQSQIG CYGKPPAPLK APWTKAEDSI LKDMVKHHGV 60 HNWKVIARYL PGRVGKQCRE RWINHLRPDI KQSDFWTEDD DKMLIEAHIY HGNRWSVIAG 120 HLPGRSENAI KNHRNATLRS LKAKRRQKKK KSEQTPPGRF SILESYIRSI YQLNDAVPAA 180 PPPSSASPPH NLLRNPVVHI PTSSVPTNLE MSFHASNSVV GLSNPRMINL NMLPPPDMNA 240 VNDPRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-35 | 36 | 139 | 3 | 105 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of target genes (PubMed:27681170). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner (PubMed:18695688). Together with MYB118, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:27681170}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462874329 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by LEC2 but repressed by MYB118. {ECO:0000269|PubMed:27681170}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972257.1 | 2e-70 | transcription factor MYB80 | ||||
Swissprot | Q1PDP9 | 4e-38 | MY115_ARATH; Transcription factor MYB115 | ||||
TrEMBL | K3XS58 | 5e-69 | K3XS58_SETIT; Uncharacterized protein | ||||
STRING | Si004755m | 8e-70 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40360.1 | 3e-38 | myb domain protein 115 |
Publications ? help Back to Top | |||
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