PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462874299 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | LSD | ||||||||
Protein Properties | Length: 175aa MW: 18182 Da PI: 8.3204 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.7 | 1.6e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YP GApsV+Ca+C+++ 462874299 7 CRGCRTVLLYPQGAPSVCCAVCQAI 31 9**********************97 PP | |||||||
2 | zf-LSD1 | 42.4 | 1.1e-13 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C+tV 462874299 46 CGGCRTLLMYTRNADTVRCSCCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 48.1 | 1.9e-15 | 84 | 107 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+C+t+L+YP+GApsV+Ca+C+ 462874299 84 CGQCGTTLMYPYGAPSVKCAICNY 107 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.1E-11 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.0E-10 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.9E-15 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.7E-11 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.4E-10 | 81 | 109 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.7E-14 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MQSQIVCRGC RTVLLYPQGA PSVCCAVCQA ITTVPPPGLE MAQLICGGCR TLLMYTRNAD 60 TVRCSCCHTV NLVRPVNNVA HVNCGQCGTT LMYPYGAPSV KCAICNYITT TGINTVATSS 120 SATPASNGSS YSASSTSAPK SQPPNVTVVV ENPMTVDEKG KLVSNVVVGV TTGRN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462874299 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982348.1 | 1e-104 | protein LOL3 | ||||
Swissprot | Q6ASS2 | 2e-95 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | K4AE78 | 1e-103 | K4AE78_SETIT; Uncharacterized protein | ||||
STRING | Si037185m | 1e-104 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 2e-54 | lsd one like 1 |
Publications ? help Back to Top | |||
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