PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462874054
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 370aa    MW: 39914.6 Da    PI: 4.5622
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462874054genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161687148
                     TSSS-HHHHHHHHHHHHHTTTT.........................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.........................tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +++++G                           +W++Ia++++ gRt++++k+ w+++l
        462874054 16 KGSWTPEEDTRLIAYIQKYGHAnwralpkqaefeadlssaricvvstRWSKIAACLP-GRTDNEIKNVWNTHL 87
                     799*****************99***********************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.8351191IPR017930Myb domain
SuperFamilySSF466899.9E-141383IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-111446IPR009057Homeodomain-like
SMARTSM007174.9E-141589IPR001005SANT/Myb domain
PfamPF002495.0E-71645IPR001005SANT/Myb domain
CDDcd001675.15E-111887No hitNo description
Gene3DG3DSA:1.10.10.604.8E-116290IPR009057Homeodomain-like
PfamPF002494.0E-66287IPR001005SANT/Myb domain
SuperFamilySSF466895.56E-763122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-8105127IPR009057Homeodomain-like
PROSITE profilePS500904.228106126IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGKGRAPCCA KVGLNKGSWT PEEDTRLIAY IQKYGHANWR ALPKQAEFEA DLSSARICVV  60
STRWSKIAAC LPGRTDNEIK NVWNTHLKKR VAPRGDDGDL CGVHQIAACL PGRTDNEIKN  120
VWNTHLKKRV APRGDENDHG AGARKKKKQK SAAAAEEEAA VIPSPSPASS TTTMTTNCSS  180
GEYSSGEQQS NATDELDLRS LEIPTMLDDA CFDFGDMLVD PSVPELYCPS VSVPTSPCVS  240
STSPPAPARG GVDDLLELPE IEIDQELWSI IDGDGGTFAE ALPPATRPGN ATEASAATTS  300
QAEEEGKEWW LENLERELGL WGPMEDYQNP MGPLGPIAHP DPLPAMVQDP VSCYFQPGPE  360
HAAVLTSNRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-131413025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126147KKRVAPRGDENDHGAGARKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462874054
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0701451e-51BT070145.1 Zea mays full-length cDNA clone ZM_BFc0138F01 mRNA, complete cds.
GenBankEU9705761e-51EU970576.1 Zea mays clone 347485 myb-related protein Zm1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824709.11e-120myb-related protein Zm1-like
TrEMBLA0A1E5ULK01e-121A0A1E5ULK0_9POAL; Myb-related protein Zm1
STRINGPavir.Ga00752.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-30myb domain protein 63