PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462873973
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 951aa    MW: 105162 Da    PI: 7.9901
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462873973genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.2e-19358457198
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++lv+++
  462873973 358 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGGKLVMGF 455
                99**************************555567778***************9989999999***9.********************887.777778777 PP

                E- CS
         B3  97 fr 98 
                ++
  462873973 456 RK 457
                76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-31350467IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-21355458IPR015300DNA-binding pseudobarrel domain
CDDcd100176.28E-24356457No hitNo description
PfamPF023624.8E-16358457IPR003340B3 DNA binding domain
SMARTSM010191.5E-22358458IPR003340B3 DNA binding domain
PROSITE profilePS5086311.589358459IPR003340B3 DNA binding domain
PROSITE profilePS5105015.042619669IPR011124Zinc finger, CW-type
PfamPF074962.9E-13624666IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 951 aa     Download sequence    Send to blast
MAAKRCMNPA CGAPAPGPGG GGDWRKGWPL RSGGFALLCD KCGLAYEQLV FCDIFHQKES  60
GWRDCSFCGK RLHCGCIASK NSYDLLDGGG VQCVTCMKNS AAHSVSGQGT PKLFPSQNSL  120
QFFGKSDELL LGRKFDQSPS IMVDTRNDDV TIINKNSHPF MLRNIEIGQS SNFLRQKEIE  180
NGSRQIKWEQ PTLSIGDIGK MPFLTRTQSA LESPQCVRRD DSKDPTTDST TSESLSEACL  240
SMSLSIANNG SRMEATSIVE RPILSPTTAM AEGRELTTSL SPFQHAQRAR NFLTRPPRVG  300
EGAAFDPTRD VFSHLRVARP PAEGRGRNQL LPRYWPRITD QELQQISGDS NSTIVPLFEK  360
VLSASDAGRI GRLVLPKACA EAYFPPISQP EGRPLTIQDA RGKEWHFQFR FWPNNNSRMY  420
VLEGVTPCIQ SLQLQAGDTV TFSRIEPGGK LVMGFRKATN TVSLPDSQIS AIANGSLLSE  480
TLFSSANENL SVVSGYPGFI QSIKGAADLH SSSLYDHHVN SADGDVSWLK TDKFGSRPDE  540
GSLRFLQKRS RNIGSKSRRF LMDAEDALEL KLTWEEAQEL LRPAPTAKPT VVTIEDYEFE  600
EYDEPPVFAK RSIFTVRTTG EQDQWIQCDD CSKWRRLPLN VIVASKWTCT DNSWDPKSSS  660
CSAPEELTPK ELQSVLQQYE EMRRRKGSSY GLKLNVAEMD ASSLDALATA AVYGEVGNQG  720
TAVATTTKHP RHRPGCTCIV CIQPPSGKGP KHNPSCTCNV CMTVKRRFKT LMMRKKQRQS  780
EREEAEASKK IQWMNRDEPE GSGLSRSPQT LDTTRDSDVT MFDKVPETNK GHIDLNFHPT  840
VRDDQEQHGS QPRPVSMMGL LEVATRPLEN YMKQNGLTSL AGEQGGSPST VTATPAPVES  900
EERTSNENRV TGSGNLMLWP SMKLARTSRK RLPTTLLLLL LLLLLDCAVG V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-673364612127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1764775KRRFKTLMMRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462873973
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0629270.0BT062927.1 Zea mays full-length cDNA clone ZM_BFc0008I17 mRNA, complete cds.
GenBankJX4285020.0JX428502.1 Zea mays subsp. mays clone pUT3100 ABI32 ABI3VP1 type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958699.10.0B3 domain-containing protein Os07g0679700
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLK3ZQF40.0K3ZQF4_SETIT; Uncharacterized protein
STRINGPavir.Ba00225.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]