PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462873892
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CPP
Protein Properties Length: 680aa    MW: 74478.8 Da    PI: 8.7475
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462873892genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.42.9e-13154192241
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                +kk CnC++s+Clk+YCeCfa+g++C+  C+C++C+N+ +
  462873892 154 KKKCCNCRNSRCLKLYCECFASGAYCDG-CNCTNCFNNPD 192
                799*************************.********986 PP
2TCR50.73.6e-16237276140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  462873892 237 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFE 276
                589***********************************65 PP
3TCR50.73.6e-16356395140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  462873892 356 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 395
                589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-14153193IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.342154277IPR005172CRC domain
PfamPF036383.1E-9155190IPR005172CRC domain
SMARTSM011145.0E-20237278IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12240275IPR005172CRC domain
PROSITE profilePS5163417.038352396IPR005172CRC domain
SMARTSM011148.4E-20356397IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-12359394IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MAGKEPGGSG PPQRPPMPAV STQPPIKKLV RQLDFNSAAI GGNPAXXXCA AAVVSRALQP  60
RAVHVGFPHP QHARAAVPLG VPHHFQHRGL PVLRPHQVVG HVPLPRQAMA VPIPQLRPVP  120
VQPVPRPPVA IPLKPESPQS RAKLYEGKDG TPTKKKCCNC RNSRCLKLYC ECFASGAYCD  180
GCNCTNCFNN PDNDAARREA IDATLERNPD AFRPKIGSSP HANRNNEASG DLPLVGKHNK  240
GCHCKKSGCL KKYCECFQAN ILCSDNCKCM DCKNFEGSEE RKALFQGDHK NAIHMQQAAN  300
AAVNGAIGVT GFPSPSTSRK RKHIDPSVDH SVKEHVASRN YHLPQEASGD LPLVGKHNKG  360
CHCKKSGCLK KYCECFQANI LCSENCKCMD CKNFEGSEER KALFQGDHKN AIHMQQAANA  420
AVNGAIGVTG FPSPSTSRKR KHIDPSVDHS VKEHVANRNY HLPQKNAVPD GSLPTNQLVH  480
PRTLGPFKVT YRQLEGRVGD VSVNASALCK EKRCQKTQEE KAAKKEDDKA GCQTSTNHDR  540
IENIPDQGQK TSISDRSSGG THMDKALEEE SRHNCADDKK SDRPMSPGTL ALMCDEQDTM  600
FTTSQNAGSQ ETVAISQNRS ALYAEQERCV LTEFRDCLRK LVTCGRMKEE RYSMGIKSEA  660
SGHLGQHYVL FTTDPKEKFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-2915840414131Protein lin-54 homolog
5fd3_B7e-2915840414131Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462873892
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312359.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD18e-93TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A3L6SJ420.0A0A3L6SJ42_PANMI; Protein tesmin/TSO1-like CXC 5 isoform X1
STRINGPavir.Eb03237.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.15e-70Tesmin/TSO1-like CXC domain-containing protein