PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462873660
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 171aa    MW: 20038.7 Da    PI: 9.6585
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462873660genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.83e-55151491129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++       +++e++e+yfFs++dkky+tg+r+nrat++g+Wkatg+dk++++
  462873660  15 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-NVIKDVDLYKIEPWDLQEkcrlggPAEEEQNEYYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKPIYA 113
                69****************************.99**************95466665444577799***********************************9 PP

        NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                + +++lvg++ktLv+ykgrap+g+k+dW+mheyrle
  462873660 114 NkQRQLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 149
                856777****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-564154IPR003441NAC domain
PROSITE profilePS5100554.09315170IPR003441NAC domain
PfamPF023651.7E-2816148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGMSSTHAQA QQQLVPPGFR FHPTDEELVD YYLRKKVASR RIDLNVIKDV DLYKIEPWDL  60
QEKCRLGGPA EEEQNEYYFF SHKDKKYPTG TRTNRATAAG FWKATGRDKP IYANKQRQLV  120
GMRKTLVYYK GRAPNGHKSD WIMHEYRLET NENGPPQASS YYLISFINWL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4911481140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462873660
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750911e-163KT075091.1 Panicum virgatum secondary wall NAC master switch (SWN7B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964278.11e-109NAC domain-containing protein 105
RefseqXP_025810695.11e-109NAC domain-containing protein 105-like
SwissprotQ9SL412e-81NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A0K1TPX31e-109A0A0K1TPX3_PANVG; Secondary wall NAC master switch
STRINGPavir.J26987.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121023039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.12e-73vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]