PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462871932
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MIKC_MADS
Protein Properties Length: 361aa    MW: 41326.6 Da    PI: 5.8601
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462871932genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.82.5e-272372251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                i+n++ rqvtfskRrngi+KKA EL +LCdaev ++ifsstg+lyey+s
  462871932 23 AIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLVIFSSTGRLYEYAS 72
               59**********************************************86 PP
2K-box87.62.4e-2988184399
      K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                +++++++ +++ + +q+e+a L+++++nLq+++R+l+G+dL+ L +keLq+Le+qLe sl+ iR+kK+++l+++i+el +k   +q++n++L kk++
  462871932  88 EQQQVANPNSELKFWQREAASLRQQLHNLQENHRQLMGQDLSGLGVKELQNLENQLEMSLRCIRTKKDQHLIDEIHELNRKGTLIQQDNMELYKKVN 184
                45666688999***********************************************************************************986 PP
3K-box50.31e-172493103798
      K-box  37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                +l+G+dL+ L +keLq+Le+qLe sl+ iR+kK  l+ +   el kk +++++en +L kkl
  462871932 249 QLMGQDLSGLGVKELQNLENQLEMSLRCIRTKKGTLIQQDNMELYKKVNQIRQENVDLYKKL 310
                89*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004042.4E-211636IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.1562274IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-2922104IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-272273IPR002100Transcription factor, MADS-box
CDDcd002654.46E-382291No hitNo description
PfamPF003196.8E-252470IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-213651IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-215172IPR002100Transcription factor, MADS-box
PfamPF014863.6E-2796183IPR002487Transcription factor, K-box
PROSITE profilePS5129715.85499189IPR002487Transcription factor, K-box
PROSITE profilePS5129711223316IPR002487Transcription factor, K-box
PfamPF014861.7E-15249310IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
LLPDPQLSSY SLCARVQDRP ARAIDNSTSR QVTFSKRRNG IFKKARELAI LCDAEVGLVI  60
FSSTGRLYEY ASTSMKQVID RYGRMKEEQQ QVANPNSELK FWQREAASLR QQLHNLQENH  120
RQLMGQDLSG LGVKELQNLE NQLEMSLRCI RTKKDQHLID EIHELNRKGT LIQQDNMELY  180
KKVNQIRQEN VDLYKKLYEK EAASEVNRDS PTPYNFAVVE NGNVPLQIEL NTPPQETDAD  240
QTAPPKLGQL MGQDLSGLGV KELQNLENQL EMSLRCIRTK KGTLIQQDNM ELYKKVNQIR  300
QENVDLYKKL YEKEAASEVN RDSPTPYNFA VVENGNVPLQ IELNTPPQET DADQTAPPKL  360
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-1629961683MEF2C
5f28_B7e-1629961683MEF2C
5f28_C7e-1629961683MEF2C
5f28_D7e-1629961683MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462871932
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636306.11e-139MADS-box transcription factor 27-like
SwissprotQ6EP491e-135MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A059Q1L51e-139A0A059Q1L5_9POAL; MADS-box transcription factor
STRINGPavir.Ga01454.1.p1e-140(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.15e-86AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]