PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462871500

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NF-YC

Protein Properties

Length: 294aa MW: 32584 Da PI: 4.6906

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462871500	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	151.6	1.5e-47	133	236	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ql+ w+ q ie+ tdfk+h+lPlarikki+kadedvkmi+ eaPv+++kace+fileltlr+wl++e +krrtl++sd+ aa+t+td+ dflvdi+p 462871500 133 QLQPLWAGQmaeIEQITDFKQHSLPLARIKKIMKADEDVKMIAGEAPVVFAKACEMFILELTLRAWLQTEGTKRRTLQRSDVVAAITKTDMLDFLVDIIP 232 7899999887779*************************************************************************************** PP NF-YC 98 rdel 101 +el 462871500 233 PEEL 236 9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.22E-31	124	227	IPR009072	Histone-fold
Pfam	PF00808	3.7E-19	155	218	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	8.0E-34	156	232	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MVDRSQSVVN GPLLTSLLAR CLRRRGEEIG VRCASRSYNS CTLKRILDME QPSPIKVNEG 60 ATNGDDPAAY ATMTYQPAAL ASAPPAEGAA FPPTSQGAST LPFNLEPVSE QHQTAFQQAQ 120 QFYQQQQQYL QEQLQPLWAG QMAEIEQITD FKQHSLPLAR IKKIMKADED VKMIAGEAPV 180 VFAKACEMFI LELTLRAWLQ TEGTKRRTLQ RSDVVAAITK TDMLDFLVDI IPPEELKGDN 240 TVGTPPPTTV PSMVPSYVPG MTIPYETYAN QQPVSFMWPL PEHQQQTSDG GRDD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	6e-45	141	232	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	211	RRTLQRS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462871500

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822248.1	1e-67	nuclear transcription factor Y subunit C-2-like
Swissprot	Q655V5	6e-57	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A2T7D4J5	3e-67	A0A2T7D4J5_9POAL; Uncharacterized protein
STRING	LPERR08G05650.1	2e-63	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15703	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-52	nuclear factor Y, subunit C2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]