PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462869935
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 378aa    MW: 41265 Da    PI: 8.9474
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462869935genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ lv +v+ +G+g+W+++++  g+ R+ k+c++rw +yl
        462869935 14 KGPWTPEEDLVLVSYVQDHGPGNWRAVPANTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.98.4e-17106153148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+ lv +v+ +G+g+W+++++  g+ R+ k+c++rw +yl
        462869935 106 KGPWTPEEDLVLVSYVQDHGPGNWRAVPANTGLMRCSKSCRLRWTNYL 153
                      79********************************************97 PP
3Myb_DNA-binding414.5e-13159199143
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                      rg++T +E++l+v++ ++lG++ W++Ia++++  Rt++++k++
        462869935 159 RGNFTDQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNY 199
                      89********************.*********.********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-23564IPR009057Homeodomain-like
PROSITE profilePS5129423.64965IPR017930Myb domain
SMARTSM007177.2E-131363IPR001005SANT/Myb domain
PfamPF002492.0E-151461IPR001005SANT/Myb domain
SuperFamilySSF466892.1E-211588IPR009057Homeodomain-like
CDDcd001671.73E-101661No hitNo description
Gene3DG3DSA:1.10.10.604.4E-66588IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-2397156IPR009057Homeodomain-like
PROSITE profilePS5129423.64101157IPR017930Myb domain
SuperFamilySSF466892.83E-28103199IPR009057Homeodomain-like
SMARTSM007177.2E-13105155IPR001005SANT/Myb domain
PfamPF002492.0E-15106153IPR001005SANT/Myb domain
CDDcd001671.73E-10108153No hitNo description
Gene3DG3DSA:1.10.10.604.6E-18157199IPR009057Homeodomain-like
PROSITE profilePS5129410.939158206IPR017930Myb domain
SMARTSM007174.9E-8158206IPR001005SANT/Myb domain
PfamPF002491.3E-11159199IPR001005SANT/Myb domain
CDDcd001673.97E-8161199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGRPPCCEKG GVKKGPWTPE EDLVLVSYVQ DHGPGNWRAV PANTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKLIVH LQALLGNRKE RRMGRPPCCE KGGVKKGPWT PEEDLVLVSY  120
VQDHGPGNWR AVPANTGLMR CSKSCRLRWT NYLRPGIKRG NFTDQEEKLI VHLQALLGNR  180
WAAIASYLPE RTDNDIKNYS AAAAGEGGVA GADAKGGRSA APKGQWERRL QTDIHTARQA  240
LREALSLDSS SAAAPPAAVK PEHAPAAAPP AGLQAAATYA SSAENIARLL EGWMRPGXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXAAP GGPAFSMLES WLLDDGMGHG  360
EAGLMGMGVP LADPCDFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-25101992150MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-25101992150MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00235DAPTransfer from AT1G74650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462869935
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8377781e-125CT837778.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664657.11e-117myb-related protein 306
SwissprotP813922e-86MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A3L6PM731e-121A0A3L6PM73_PANMI; Uncharacterized protein
STRINGGRMZM2G131937_P011e-116(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.21e-73myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]