PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462869299
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 284aa    MW: 32027.2 Da    PI: 10.0225
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462869299genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-071461347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      W+++E +++ +a + +G +   +W+++++ +g  ++++++  +++++
        462869299 14 EWSKQENKKFEQALAYYGEDtpnRWDKVSSALGGSKSAEEVWYHYLDL 61
                     6********************************99********99875 PP
2Myb_DNA-binding22.23.3e-07168215347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                       W+++E +++ +a + +G +   +W+++++ +g  ++++++  +++++
        462869299 168 EWSKQENKKFEQALAYYGEDtpnRWDKVSSALGGSKSAEEVWYHYLDL 215
                      6********************************99********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.2781071IPR017884SANT domain
SMARTSM007177.6E-71164IPR001005SANT/Myb domain
SuperFamilySSF466892.39E-111469IPR009057Homeodomain-like
CDDcd001672.01E-41459No hitNo description
PfamPF002491.8E-61461IPR001005SANT/Myb domain
PROSITE profilePS512938.278164225IPR017884SANT domain
SMARTSM007177.6E-7165218IPR001005SANT/Myb domain
PfamPF002491.8E-6168215IPR001005SANT/Myb domain
SuperFamilySSF466892.39E-11168223IPR009057Homeodomain-like
CDDcd001672.01E-4168213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSGSRSSSPN SITEWSKQEN KKFEQALAYY GEDTPNRWDK VSSALGGSKS AEEVWYHYLD  60
LVDDVKKIQS RQVPFPKVIS FPQEMFSNCR TNTTCSQYKA QAALALEAPV GRKQTSKDLS  120
KVIQLWLENK RMKRLHYGSI STPVSILLRV LSSKMSGSRS SSPNSITEWS KQENKKFEQA  180
LAYYGEDTPN RWDKVSSALG GSKSAEEVWY HYLDLVDDVK KIQSRQALAL EAPVGRKQTS  240
KDLSKARPLL SMRRHMYQAP IDLYGFHRSH NAAISSGLGS AFSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-13676271RADIALIS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462869299
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1015656e-32FP101565.1 Phyllostachys edulis cDNA clone: bphyst028c11, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-17RAD-like 1