PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462869293
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 168aa    MW: 18811.2 Da    PI: 6.918
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462869293genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-0831522446
                     HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                     W++Ia++++ gRt+ ++k++w++
        462869293 31 WSRIASHFP-GRTDDEIKNHWRT 52
                     *********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-93160IPR009057Homeodomain-like
PfamPF002497.6E-63152IPR001005SANT/Myb domain
CDDcd001674.70E-63152No hitNo description
SuperFamilySSF466894.52E-63157IPR009057Homeodomain-like
PROSITE profilePS500906.0863154IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MCTSISQLTL RNLRGLSCYN LVILIVSFFV WSRIASHFPG RTDDEIKNHW RTKIQVKKQR  60
KQDFMATNKS STSAEKQGSC NSNSGRTEAM QDYGIVVPQA DTHILDNSQD YNPHGGGGGG  120
SCNGAAMDIP LGILALSGEN FWSFEDLWPM EMEQRQYLQI SVNSPDKF
Cis-element ? help Back to Top
SourceLink
PlantRegMap462869293
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808591.15e-19transcription factor MYB24-like
TrEMBLA0A2T7EA771e-18A0A2T7EA77_9POAL; Uncharacterized protein
STRINGOB05G33720.18e-18(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.12e-13myb domain protein 57