PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462869293 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 168aa MW: 18811.2 Da PI: 6.918 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.7 | 2.7e-08 | 31 | 52 | 24 | 46 |
HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46 W++Ia++++ gRt+ ++k++w++ 462869293 31 WSRIASHFP-GRTDDEIKNHWRT 52 *********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-9 | 31 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.6E-6 | 31 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.70E-6 | 31 | 52 | No hit | No description |
SuperFamily | SSF46689 | 4.52E-6 | 31 | 57 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.086 | 31 | 54 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MCTSISQLTL RNLRGLSCYN LVILIVSFFV WSRIASHFPG RTDDEIKNHW RTKIQVKKQR 60 KQDFMATNKS STSAEKQGSC NSNSGRTEAM QDYGIVVPQA DTHILDNSQD YNPHGGGGGG 120 SCNGAAMDIP LGILALSGEN FWSFEDLWPM EMEQRQYLQI SVNSPDKF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462869293 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808591.1 | 5e-19 | transcription factor MYB24-like | ||||
TrEMBL | A0A2T7EA77 | 1e-18 | A0A2T7EA77_9POAL; Uncharacterized protein | ||||
STRING | OB05G33720.1 | 8e-18 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01530.1 | 2e-13 | myb domain protein 57 |