PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462869223
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 805aa    MW: 89647.3 Da    PI: 6.477
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462869223genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.36.8e-24104205199
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+k+lt sd++++g +++ +++a+e+     +++++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + +++el+v+
  462869223 104 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQHPPNQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RGENGELRVG 201
                99*****************************555555669************************************************..449999**** PP

                EE-S CS
         B3  96 vfrk 99 
                v+r+
  462869223 202 VRRA 205
                *985 PP
2Auxin_resp111.96e-37230312183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t+s+F+++Y+Pr+s++eFvv+++++ ++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ ++dp+ W++SkWrsLk
   462869223 230 AWHAVNTGSMFTIYYKPRTSPAEFVVSRDRYYESLKQNYSIGMRFKMRFEGEEAAEQRFTGTIVGIGASDPSGWTDSKWRSLK 312
                 89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-4197219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-41101233IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-21102204No hitNo description
PROSITE profilePS5086311.73104206IPR003340B3 DNA binding domain
SMARTSM010197.7E-23104206IPR003340B3 DNA binding domain
PfamPF023621.0E-21104205IPR003340B3 DNA binding domain
PfamPF065077.9E-34230312IPR010525Auxin response factor
PROSITE profilePS5174523.364678762IPR000270PB1 domain
SuperFamilySSF542771.32E-11682754No hitNo description
PfamPF023094.4E-7724761IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MPPLGEKVYY FPQGHIEQVE ASTNQVAEQQ GTPLYNLPWK IPCKLMNIEL KAEQDTDEVY  60
AQLTLLPDKK QEENASTTDG TEEEEVAVPD APPATNERIR IHSFCKTLTA SDTSTHGGFS  120
VLRRHADECL PPLDMSQHPP NQELVAKDLH GVEWRFRHIF RGQPRRHLLQ SGWSVFVSAK  180
RLVAGDAFIF LRGENGELRV GVRRALRHQS TVPSSVISSH SMHLGVLATA WHAVNTGSMF  240
TIYYKPRTSP AEFVVSRDRY YESLKQNYSI GMRFKMRFEG EEAAEQRFTG TIVGIGASDP  300
SGWTDSKWRS LKVRWDEASS VPRPERVSPW QIEPAVSPPP VNAHSAVRTK RSRPNANASS  360
SDLPAVTNRE AASTAVPDSQ QTFIPRALHS QGITPLTSRF GDSSDLKIAH DVTMWSSGIN  420
EDRNCMSTQT KLSLEGWMQT RRPEGYNQML SGFQPVKDAH NSHYFSSPIS GNRSNTWDTT  480
NARYPVQQAN RNMLPGTWSL MPDNSTGLGM NQHSYLTMPD TAFPHRTENG NFSRNGAFTS  540
LQGCGLDQNL GWCGNIESSS HIYHSSPTLI KPRPLVIDND VQKTKGPSFK LFGIPLDSPA  600
KPEPLLSPPS VAYDGKLQIS PSENRNQLDL VELGNCPNPP KTVKPLEGPQ PDSVMENNQP  660
CVEAIQNIQN KVQNGSTRSC KKVHKQGSAL GRSVDLTKFT CYDDFVAELD QMFDFDGELS  720
SPSKNWLVVY TDNDGDMMLV GDDPWNEFCN MVHKIFIYTR EEIERMNPGA LNLKSEDSLS  780
NSLGRVASKE LQGGPSTLSL DSENC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-160133434354Auxin response factor 1
4ldw_A1e-160133434354Auxin response factor 1
4ldw_B1e-160133434354Auxin response factor 1
4ldx_A1e-160133434354Auxin response factor 1
4ldx_B1e-160133434354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462869223
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962662.10.0auxin response factor 24
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLK3Z3U80.0K3Z3U8_SETIT; Auxin response factor
STRINGSi021216m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.40.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]