PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462869193
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 328aa    MW: 36539.2 Da    PI: 8.3105
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462869193genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-151469148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg.......kgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++ ++++G+g +W + +++ g       ++R++k+c++rw++yl
        462869193 14 KGPWSPEEDAKLKEFIEKHGTGgNWIALPQKAGtiyeiiwLRRCGKSCRLRWLNYL 69
                     79****************************************************97 PP

2Myb_DNA-binding36.11.5e-1176118246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+ Ed  + +  +  G++ W+ Ia+ ++ gRt++++k++w++
        462869193  76 GEFTEHEDRVICNMYASIGSR-WSIIASQLP-GRTDNDIKNYWNT 118
                      78*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.102969IPR017930Myb domain
SuperFamilySSF466893.13E-2611116IPR009057Homeodomain-like
SMARTSM007175.6E-111371IPR001005SANT/Myb domain
PfamPF002491.5E-141469IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221576IPR009057Homeodomain-like
CDDcd001671.82E-91669No hitNo description
PROSITE profilePS5129420.67670124IPR017930Myb domain
SMARTSM007173.2E-1174122IPR001005SANT/Myb domain
PfamPF002491.8E-976118IPR001005SANT/Myb domain
CDDcd001674.91E-877120No hitNo description
Gene3DG3DSA:1.10.10.608.8E-2377124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGRAPCCDKN NVKKGPWSPE EDAKLKEFIE KHGTGGNWIA LPQKAGTIYE IIWLRRCGKS  60
CRLRWLNYLR PNIKHGEFTE HEDRVICNMY ASIGSRWSII ASQLPGRTDN DIKNYWNTKL  120
KKKLLGTSAI TAPPHRAPRQ HHRPLNLMLQ HSSPSLSLQP TYSSFFSNAG SLHDPIIPAL  180
TLPPPQDFLL SSSLAMPNAS SLLQAHGVTQ QQLHHHVVKE ESGSMIVFGG DQQSCSSSDG  240
GAQSRQQFSH GKELSFDGYY GCNNGNMEHD HRLLQLQEHH QQAQVPVDYN YEEIKQLLLS  300
STAGNLHGGQ GHEGGMEGFG SQGKVTMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-25141247108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462869193
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0962053e-68FP096205.1 Phyllostachys edulis cDNA clone: bphylf043l07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975125.10.0transcription factor RAX2
TrEMBLK3Y8T50.0K3Y8T5_SETIT; Uncharacterized protein
STRINGSi010627m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.11e-72myb domain protein 68