PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462868638 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ARF | ||||||||
Protein Properties | Length: 579aa MW: 63391.4 Da PI: 7.9654 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64.3 | 1.9e-20 | 24 | 117 | 9 | 99 |
HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 d+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +++ +el+v+++r+ 462868638 24 DANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTELGELCVGIRRA 117 7778899********999***9996555555..8999*********************************************..559999*****997 PP | |||||||
2 | Auxin_resp | 119.7 | 2.3e-39 | 172 | 255 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eFvvk+++v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS Wr+L+ 462868638 172 AASLAASGQPFEVVYYPRASTPEFVVKAASVQNAMRIQWCPGMRFKMAFETEDSSRISWfMGTIASVQVADPIRWPNSLWRLLQ 255 688999****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.9E-13 | 18 | 118 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-18 | 23 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-30 | 24 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.76E-16 | 24 | 116 | No hit | No description |
SuperFamily | SSF101936 | 4.97E-24 | 26 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.406 | 55 | 118 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.0E-33 | 172 | 255 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.898 | 484 | 562 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
MKEAGDERCL DPQLWHACAG GMPDANNGGG FSVPRYCAET IFPKLDYRAD PPVQTVLAKD 60 VHGEVWKFRH IYRGTPRRHL LTTGWSTFVN QKKLVAGDSI VFLRTELGEL CVGIRRAKRV 120 SCGGMECMSG WNAPGYGGFS PFLKEEESKL MKGPGGYMRG RGKVKIADVV DAASLAASGQ 180 PFEVVYYPRA STPEFVVKAA SVQNAMRIQW CPGMRFKMAF ETEDSSRISW FMGTIASVQV 240 ADPIRWPNSL WRLLQVTWDE PDLLQNVKCV NPWLVELVSS IPPIHLGPFS PPRKKLRMPQ 300 HPDFPFDGQL LNPIFHGNPL GPSNSPLCCF PDNAPAGIQG ARQFGLSITD HQLNKLRLGL 360 LQGSGFNRLD TITPSSRISK GFVITSAPVH GSVSCLLTIG TPQGAEKPDD KKKPHIMLFG 420 KPILTEQQMN SRGSRETFSP EATGNSSSNG NVSKAANASD GSGSSICIGF SSQGHEASDL 480 GLEAGHCKVF MESEDVGRTI DLSVFGSYEE LYGQLADMFG IEKAEIISHL RYRDAAGAVK 540 HTGEEPFSDF MKVARRLTIT EGSEGRLQKP LIECLVERA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-54 | 24 | 280 | 166 | 392 | Auxin response factor 5 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 291 | 297 | PRKKLRM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462868638 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982839.1 | 0.0 | auxin response factor 22 | ||||
Swissprot | Q9AV47 | 0.0 | ARFV_ORYSJ; Auxin response factor 22 | ||||
TrEMBL | K4A6M0 | 0.0 | K4A6M0_SETIT; Auxin response factor | ||||
STRING | Si034525m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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