PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462868638
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 579aa    MW: 63391.4 Da    PI: 7.9654
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462868638genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.31.9e-2024117999
                HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   9 dvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                d+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +++ +el+v+++r+
  462868638  24 DANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTELGELCVGIRRA 117
                7778899********999***9996555555..8999*********************************************..559999*****997 PP

2Auxin_resp119.72.3e-39172255183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+++++FevvY+Prast+eFvvk+++v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS Wr+L+
   462868638 172 AASLAASGQPFEVVYYPRASTPEFVVKAASVQNAMRIQWCPGMRFKMAFETEDSSRISWfMGTIASVQVADPIRWPNSLWRLLQ 255
                 688999****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.9E-1318118IPR003340B3 DNA binding domain
PfamPF023621.4E-1823117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-3024119IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-1624116No hitNo description
SuperFamilySSF1019364.97E-2426120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.40655118IPR003340B3 DNA binding domain
PfamPF065071.0E-33172255IPR010525Auxin response factor
PROSITE profilePS5174519.898484562IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MKEAGDERCL DPQLWHACAG GMPDANNGGG FSVPRYCAET IFPKLDYRAD PPVQTVLAKD  60
VHGEVWKFRH IYRGTPRRHL LTTGWSTFVN QKKLVAGDSI VFLRTELGEL CVGIRRAKRV  120
SCGGMECMSG WNAPGYGGFS PFLKEEESKL MKGPGGYMRG RGKVKIADVV DAASLAASGQ  180
PFEVVYYPRA STPEFVVKAA SVQNAMRIQW CPGMRFKMAF ETEDSSRISW FMGTIASVQV  240
ADPIRWPNSL WRLLQVTWDE PDLLQNVKCV NPWLVELVSS IPPIHLGPFS PPRKKLRMPQ  300
HPDFPFDGQL LNPIFHGNPL GPSNSPLCCF PDNAPAGIQG ARQFGLSITD HQLNKLRLGL  360
LQGSGFNRLD TITPSSRISK GFVITSAPVH GSVSCLLTIG TPQGAEKPDD KKKPHIMLFG  420
KPILTEQQMN SRGSRETFSP EATGNSSSNG NVSKAANASD GSGSSICIGF SSQGHEASDL  480
GLEAGHCKVF MESEDVGRTI DLSVFGSYEE LYGQLADMFG IEKAEIISHL RYRDAAGAVK  540
HTGEEPFSDF MKVARRLTIT EGSEGRLQKP LIECLVERA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-5424280166392Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291297PRKKLRM
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462868638
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982839.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLK4A6M00.0K4A6M0_SETIT; Auxin response factor
STRINGSi034525m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]