PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462868449
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 285aa    MW: 31365.3 Da    PI: 9.848
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462868449genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.35.9e-34181102103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++++e+++++e+isw e+g+sfvv+++ efa+++Lp +Fkhsnf+SFvRQLn+YgF+kv  ++         weF++++F+kg++ ll+ i+
     462868449  18 FLTKTHQMVEERATDEVISWAEQGRSFVVWKPVEFARDLLPLHFKHSNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRKGEQGLLSGIR 105
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+ks+
     462868449 106 RRKST 110
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-369101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-5414107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.33E-3214107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.0E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.2E-3018107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MADAETATAA GGGGPAPFLT KTHQMVEERA TDEVISWAEQ GRSFVVWKPV EFARDLLPLH  60
FKHSNFSSFV RQLNTYGFRK VVPDRWEFAN ENFRKGEQGL LSGIRRRKST TPQSSKSGGS  120
GVNVAFPPPL PPLPPASATT SSSASSPPRA DLTVENEQLK KDNHTLAAEL AQARRQCEEL  180
LGFLSRFLDV RRLDLRLLMQ EDMRAAGDGQ GQQQQQQCRA AADHRERGGE EKSVKLFGVL  240
LKDAARKRAR CEEAAASERP IKMIRVGEPW VGVPSSGPGR YGGEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B4e-21181115109Heat shock factor protein 2
5d8l_B4e-21181115109Heat shock factor protein 2
5d8l_D4e-21181115109Heat shock factor protein 2
5d8l_F4e-21181115109Heat shock factor protein 2
5d8l_H4e-21181115109Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462868449
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277531e-135KJ727753.1 Zea mays clone pUT5696 HSF transcription factor (HSF1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802216.11e-148heat stress transcription factor B-1-like isoform X1
SwissprotQ67TP91e-138HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLA0A1E5VP741e-149A0A1E5VP74_9POAL; Heat stress transcription factor B-1
STRINGPavir.Bb02269.1.p1e-157(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-51heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]