PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462867614
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Nin-like
Protein Properties Length: 772aa    MW: 85743.9 Da    PI: 8.7859
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462867614genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK919.2e-29469519252
     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                ek++sl++l+kyF++++kdAAk++gvc+T+LKriCRq GI+RWP+Rkik++
  462867614 469 EKNVSLSVLQKYFAGSLKDAAKSIGVCPTTLKRICRQQGIMRWPSRKIKKV 519
                89***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.324448539IPR003035RWP-RK domain
PfamPF020429.5E-25471519IPR003035RWP-RK domain
Gene3DG3DSA:3.10.20.2409.7E-9689740No hitNo description
SuperFamilySSF542775.23E-10689740No hitNo description
PfamPF005641.8E-4691740IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MIRSASKKLG MKERAASVPR QMLRSTLQER TLRALALLKG ASGDEPIFAQ VWMPVRNGDH  60
QVLTTAEQPF LLDERLTGYR EISRQFTSAA TQGSGLFLGL PGRVFLSGML EWTSNVMCYN  120
SSEYLRVDHA MRHEVRGSLA LPVFDRSSNS CCSVLELAMT KEKDNFCSEI DEICNALQLI  180
DNIATLQSVD LSTVKARTSP QRLTRNKEAA FMEILDVLRA ACHAHMLPVA LAWVPACSSG  240
NANTSIKYGR QAINSASRKK YFLCIQESAC FVNDIRMHDF VRACSEHPLE EGQGVAGKAI  300
LSNNPFFSSD VSEYDMGDYP LAHHARKFGI HAAVAIRLRS TLTGNDDYVL EFFLPLLCNG  360
GEEQQLLLDS ISVTMQRACK SLRTVSDTEM MEDAPEMSSQ DKGSEIRCTS SDISVSSGVK  420
YNSPSDIRIN TRPGNHLGST NEKPGDKSRA NKLKPSKAPC VEKTRVFSEK NVSLSVLQKY  480
FAGSLKDAAK SIGVCPTTLK RICRQQGIMR WPSRKIKKVN RSLRKIQNVI SSVQGVNREL  540
KYDPATGFLI SSASPSRKPS QMSAELDATD SLLTEPELSE LKIEPDCDAY CLNDGLCRKS  600
DTVRRGNMLY HTEMHQKDAS LENVWIHGVH QKDASRDPLS MPQQCNTDNK NIEQSLPSSS  660
SMTNSSGGSG STFKVYVKPK KDNKSNIVII VKAFYKDDTL RFRLLPTMRY QQLLLEVAKR  720
LKLTVGTFQL KNKDDEDEWV RDVPYVAGSS SGSTSISGMI MEKEPITVKV KG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462867614
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576097.20.0protein NLP2
RefseqXP_024319185.10.0protein NLP2
SwissprotQ0JC270.0NLP2_ORYSJ; Protein NLP2
TrEMBLA0A0Q3EMH20.0A0A0Q3EMH2_BRADI; Uncharacterized protein
STRINGTraes_4AL_F5C91EC4A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-174Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]