PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462867543 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | FAR1 | ||||||||
Protein Properties | Length: 776aa MW: 85881.4 Da PI: 7.0672 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70 | 5.4e-22 | 76 | 175 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk ++ + + +rtgC a+l++k+ + +++t+++ eHnH+l 462867543 76 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdeasagagtSSPVPPRCPDSRTGCLASLTIKLVPsANAFRITDFVAEHNHPL 174 6*****************99997666.****************999966666665543334448899**************9899**************9 PP FAR1 90 a 90 a 462867543 175 A 175 7 PP | |||||||
2 | FAR1 | 69 | 1.2e-21 | 223 | 322 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fYn+YA++vGFsvr+s++k++ g i++r fvCs+eg +++ k++ + + r + trtgC+a++++k + +++v+k+ eHnH+ 462867543 223 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKQEgittgsanggtglAGTPRPGPPPTRTGCQARMVIKITPCRTYRVAKFFPEHNHP 320 9*************9976665..999****************9999*********99988888889999******************************* PP FAR1 89 la 90 la 462867543 321 LA 322 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.1E-19 | 76 | 175 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 3.3E-18 | 223 | 322 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.113 | 493 | 540 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 6.1E-6 | 493 | 539 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 9.3E-6 | 515 | 542 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 776 aa Download sequence Send to blast |
MSAAPDPSHL SGEFSPSSPT SSGSSSPSSS GAADPAATNL AQAASASAAG DEVDADAAPT 60 SPRVGMYFET EDDAYEFYKA YAARLGFVVR KSNKSKNSRH TVTRRLFVCS KQGFRQEPKK 120 PQDEASAGAG TSSPVPPRCP DSRTGCLASL TIKLVPSANA FRITDFVAEH NHPLASAAPA 180 VSLALLPPSS SHHSISTMAS LPDPKDGPHP DMHFETEEDA YVFYNRYAEH VGFSVRRSYK 240 KRKRGVIVSR IFVCSREGVS DRAKQEGITT GSANGGTGLA GTPRPGPPPT RTGCQARMVI 300 KITPCRTYRV AKFFPEHNHP LANPDSVFES SKGFSNALSH CLFDCEDEIE FLSAWEKLFE 360 KHEIGESEWL GRLFLEKEKW ALPYQRTMFS ADILTTLRKD NMINDLKKEL SEQEDILQFL 420 RRYESILEEH RSKKLHADVD NIQVTLPIPS LRMLKQASSA YTPEAFKAFQ GEFEAYMNCM 480 SFPCGGVATI SEYKIVLDDK PSESIVKFDA LDGSATCSCK KFEAVGIQCC HILKVLDLKN 540 IKELPQQYIL KRWRKDARSV QIGEEPTYGS SSSIITQPAS EDRFSNMCCL ANLIASRAAR 600 SEEAMSYIEN QSSLLLKHLD DILQTGYPEM GNHAVASSSQ AISFGGNQHP DHTTQARGVA 660 QTTNDALEPQ NHMWPQPPNF APILGTITRR SVAKQHPYGH RTTWWGDSSP YSTMSSSQKL 720 ARDVYSLHPT IDSSPRDEHE REQSWEMTIK SHGWYGDKLT SINEAIKLGM RDERQR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462867543 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804639.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025804640.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A2YLI9 | 0.0 | A2YLI9_ORYSI; Uncharacterized protein | ||||
STRING | Pavir.Ba00914.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-30 | FAR1-related sequence 5 |