PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462867543
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 776aa    MW: 85881.4 Da    PI: 7.0672
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462867543genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1705.4e-2276175190
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk           ++    + + +rtgC a+l++k+    + +++t+++ eHnH+l
  462867543  76 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdeasagagtSSPVPPRCPDSRTGCLASLTIKLVPsANAFRITDFVAEHNHPL 174
                6*****************99997666.****************999966666665543334448899**************9899**************9 PP

       FAR1  90 a 90 
                a
  462867543 175 A 175
                7 PP

2FAR1691.2e-21223322290
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                fYn+YA++vGFsvr+s++k++   g i++r fvCs+eg +++ k++             + + r   + trtgC+a++++k +   +++v+k+  eHnH+
  462867543 223 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKQEgittgsanggtglAGTPRPGPPPTRTGCQARMVIKITPCRTYRVAKFFPEHNHP 320
                9*************9976665..999****************9999*********99988888889999******************************* PP

       FAR1  89 la 90 
                la
  462867543 321 LA 322
                97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.1E-1976175IPR004330FAR1 DNA binding domain
PfamPF031013.3E-18223322IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.113493540IPR007527Zinc finger, SWIM-type
PfamPF044346.1E-6493539IPR007527Zinc finger, SWIM-type
SMARTSM005759.3E-6515542IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MSAAPDPSHL SGEFSPSSPT SSGSSSPSSS GAADPAATNL AQAASASAAG DEVDADAAPT  60
SPRVGMYFET EDDAYEFYKA YAARLGFVVR KSNKSKNSRH TVTRRLFVCS KQGFRQEPKK  120
PQDEASAGAG TSSPVPPRCP DSRTGCLASL TIKLVPSANA FRITDFVAEH NHPLASAAPA  180
VSLALLPPSS SHHSISTMAS LPDPKDGPHP DMHFETEEDA YVFYNRYAEH VGFSVRRSYK  240
KRKRGVIVSR IFVCSREGVS DRAKQEGITT GSANGGTGLA GTPRPGPPPT RTGCQARMVI  300
KITPCRTYRV AKFFPEHNHP LANPDSVFES SKGFSNALSH CLFDCEDEIE FLSAWEKLFE  360
KHEIGESEWL GRLFLEKEKW ALPYQRTMFS ADILTTLRKD NMINDLKKEL SEQEDILQFL  420
RRYESILEEH RSKKLHADVD NIQVTLPIPS LRMLKQASSA YTPEAFKAFQ GEFEAYMNCM  480
SFPCGGVATI SEYKIVLDDK PSESIVKFDA LDGSATCSCK KFEAVGIQCC HILKVLDLKN  540
IKELPQQYIL KRWRKDARSV QIGEEPTYGS SSSIITQPAS EDRFSNMCCL ANLIASRAAR  600
SEEAMSYIEN QSSLLLKHLD DILQTGYPEM GNHAVASSSQ AISFGGNQHP DHTTQARGVA  660
QTTNDALEPQ NHMWPQPPNF APILGTITRR SVAKQHPYGH RTTWWGDSSP YSTMSSSQKL  720
ARDVYSLHPT IDSSPRDEHE REQSWEMTIK SHGWYGDKLT SINEAIKLGM RDERQR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462867543
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804639.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025804640.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA2YLI90.0A2YLI9_ORYSI; Uncharacterized protein
STRINGPavir.Ba00914.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-30FAR1-related sequence 5