PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462867517 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 179aa MW: 19930.8 Da PI: 9.431 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 7.8e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv++++ +G +W+++++ g+ R++k+c++rw +yl 462867517 13 RGLWSPEEDEKLVRYITAHGHSCWSSVPKNAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.3 | 2.4e-15 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg + +E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++ 462867517 66 RGTLSDQEERIIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 109 678899****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-26 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.488 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.68E-28 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-10 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.086 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-14 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.76E-10 | 70 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MGHHCCSKQK VKRGLWSPEE DEKLVRYITA HGHSCWSSVP KNAGLQRCGK SCRLRWINYL 60 RPDLKRGTLS DQEERIIIDV HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL 120 DPKTHNLLPA SKSLLRGANP SSAHGVGANA AFDLELMESC GFFGGGAGGN AMDQLQWDC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462867517 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004006 | 2e-52 | AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06. | |||
GenBank | AP004259 | 2e-52 | AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02. | |||
GenBank | AP014963 | 2e-52 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 2e-52 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957753.1 | 2e-94 | transcription factor MYB61 | ||||
Swissprot | Q8LPH6 | 3e-66 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | K3ZU71 | 4e-93 | K3ZU71_SETIT; Uncharacterized protein | ||||
STRING | Si030152m | 8e-94 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9751 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 1e-84 | myb domain protein 67 |