PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462866440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 27974.6 Da PI: 7.0561 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38 | 3.1e-12 | 83 | 129 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr ++P K++Ka+ L +++ ++k+L 462866440 83 KNHSEAERRRRERINAHLATLRGMVPCT-----DKMDKAALLAEVITHVKKL 129 58*************************7.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.31E-13 | 78 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.148 | 80 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.5E-10 | 83 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-14 | 83 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-11 | 86 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 3.43E-5 | 165 | 233 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 3.6E-5 | 165 | 214 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MSLCLADHHR CGSLLEGDMS SVPLSDSGLY TGFGGGHDHE LISQVLGASS TSPVVLDRNA 60 QELDAAAAKD VGKRKGDRTE SLKNHSEAER RRRERINAHL ATLRGMVPCT DKMDKAALLA 120 EVITHVKKLK TNAARISQHC PVPADADEVT VELVHDGGVV LVKATLSCDD GADILADVRD 180 ALRPLRLRVV GSEVTTLGGR VRFTFLMSSP AGGDDDVSVG GVHQALQSVL DKANNALEFA 240 PRASLLNKRR RFSTFESSSS SS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 92 | KRKGDRTESLKNHSEAERRRR |
2 | 88 | 93 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462866440 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818650.1 | 1e-92 | transcription factor bHLH30-like | ||||
TrEMBL | A0A3L6FN23 | 7e-93 | A0A3L6FN23_MAIZE; Transcription factor bHLH30 | ||||
STRING | GRMZM2G016039_P01 | 2e-93 | (Zea mays) | ||||
STRING | GRMZM2G166642_P01 | 2e-93 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11011 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 6e-32 | bHLH family protein |