PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462866365 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 418aa MW: 46633 Da PI: 4.7026 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.5 | 3.3e-33 | 58 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....sgyWkatgkd 89 lp G++F+P+d+el+ + L+k+ ++ + +e++ ++e +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + +W++tgk+ 462866365 58 LPSGVKFDPSDQELLLHLLAKHGKAGRkphpfIEEFIPtVEEEeGICYTHPQKLP-GVKQDGTVSHFFHRTFKAYNTGTRKRRKINtdlaDVRWHKTGKT 156 699**************9999866665566543332322444447**********.677888999******************7554566899******* PP NAM 90 kevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 k+vl+ +g++ g+kk++v+y + k+ekt+Wvmh+y+l 462866365 157 KPVLV-DGKHLGCKKIMVLYisPVKGGKAEKTNWVMHQYHL 196 *****.999***********6545777888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-37 | 43 | 215 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.732 | 58 | 215 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-14 | 59 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MNRTSWIIDS QRFAKKIKGG SGSLDPSKQK WMSNPTMECK NCGHVIDNSD VVHQWPGLPS 60 GVKFDPSDQE LLLHLLAKHG KAGRKPHPFI EEFIPTVEEE EGICYTHPQK LPGVKQDGTV 120 SHFFHRTFKA YNTGTRKRRK INTDLADVRW HKTGKTKPVL VDGKHLGCKK IMVLYISPVK 180 GGKAEKTNWV MHQYHLGTGE DEIDGEYVVS KLFYQYKSGE KNAQELTAAD GVESVAAEAD 240 LPDLLPFPSE EDIATNQEVI HSPEHNPYQV NGTCEINMEE NAAEETDVLA PSEKPGEPGD 300 PENPQSQEPK LWEGDSQIDL LDSQQLAEGL ALCDEFLLSQ SQTSCGDGDE PKTIKPRLAV 360 YAQLPAEDFK KDLEECQRLD PSDNGNLELD SANEFRLSQI EFSQDSFSAW AGGKMLDD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462866365 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965197.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-131 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A368QV69 | 0.0 | A0A368QV69_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Da01643.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-114 | NAC family protein |