PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462866270
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CO-like
Protein Properties Length: 400aa    MW: 43946 Da    PI: 5.1854
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462866270genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.3e-07445540
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                C+ +++++   +C+++   lC +C  + H+       Ht++
  462866270  4 LCDFCGKQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
               7*****************************657888889876 PP
2zf-B_box23.71e-074789541
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                C++++++++   C  ++  lC++C  + H        H++++
  462866270 47 LCDRCSSQPAAVRCLHDNISLCQNCDWNAHDAasgaagHKRQS 89
               7**************************9994477888888876 PP
3CCT639.1e-22344387144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R++al+RYkeK+k+RkF+KkirY+sRKa+A++R RvKGrF k+ 
  462866270 344 RDNALTRYKEKKKRRKFDKKIRYASRKARADTRRRVKGRFIKAG 387
                899*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
SMARTSM003361.6E-10147IPR000315B-box-type zinc finger
CDDcd000212.03E-6447No hitNo description
PROSITE profilePS501199.1154390IPR000315B-box-type zinc finger
PfamPF006431.4E-54790IPR000315B-box-type zinc finger
CDDcd000210.001174790No hitNo description
SMARTSM003360.174890IPR000315B-box-type zinc finger
PfamPF062037.8E-17344386IPR010402CCT domain
PROSITE profilePS5101715.408344386IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAALCDFCGK QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CSSQPAAVRC  60
LHDNISLCQN CDWNAHDAAS GAAGHKRQSI NCYSGCPSSA ELSRIWSFVM DIPTVAAEPN  120
CEDVISMMNI DDSDVSNHCD AMEDKRLLEI ASTTLMSDPP PGEKPKPLIG SCSGDGINIP  180
PLAADQPAGQ VSVTPKVAEA TENDKFNDGN IYEDFCVDDA DLTFENYEEL FGTSHIQTEQ  240
LFDDAGIDSY FEMKEMLPAD SNEEHKYMQL ECSNMVSADS ARADSSLCIP VRQVRSSLSH  300
SFSGLTGESS AGDHQDCGVS PMVNMGEPPW HPPGPDGSCA GGSRDNALTR YKEKKKRRKF  360
DKKIRYASRK ARADTRRRVK GRFIKAGEAY DYDPLSPRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1353357KKKRR
2353358KKKRRK
3354358KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462866270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953745.10.0zinc finger protein CONSTANS-LIKE 9
TrEMBLK3YSX90.0K3YSX9_SETIT; Uncharacterized protein
STRINGSi017374m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-109CONSTANS-like 9