PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462866246
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YC
Protein Properties Length: 115aa    MW: 12735.6 Da    PI: 10.108
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462866246genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC95.25.5e-3047112161
      NF-YC   1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlr 61 
                ql++fw++q     + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilel +r
  462866246  47 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELPIR 112
                89*****997665555689********************************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.08E-1732109IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.0E-2563109IPR009072Histone-fold
PfamPF008084.7E-1371109IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MDNQKLPYST GGQPSSATGG APVPGVPSAT GPPPVPHHHL LQQQQAQLQA FWAYQRQEAE  60
RASASDFKNH QLPLARIKKI MKADEDVRMI SAEAPVLFAK ACELFILELP IRRRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B6e-2555112358NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462866246
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases at the end of the dark period, peaks in the beginning of the light period and gradually decreases during daytime. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880431e-119AB288043.1 Oryza sativa Japonica Group OsHAP5C gene for HAP5 subunit of HAP complex, complete cds.
GenBankAC1342351e-119AC134235.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0030J04, complete sequence.
GenBankAC1342401e-119AC134240.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0081I10, complete sequence.
GenBankAP0149591e-119AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-119CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8365391e-119CT836539.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN017G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147992.18e-50nuclear transcription factor Y subunit C-1
RefseqXP_008675138.18e-50nuclear transcription factor Y subunit C-1 isoform X1
SwissprotA6BLW47e-35NFYC2_ORYSJ; Nuclear transcription factor Y subunit C-2
TrEMBLA0A3L6TPP62e-51A0A3L6TPP6_PANMI; Nuclear transcription factor Y subunit C-1
STRINGOPUNC03G10350.12e-51(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73453551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.14e-33nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]