PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462866040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 309aa MW: 34295.4 Da PI: 9.9692 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.1 | 1.6e-23 | 163 | 265 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+ltpsd++++g +++ +++a+e+ + ++ s++l+ +d++g +W++++i+r+++++++lt +GW+ Fv++++L +gD +vF + +++el 462866040 163 FCKTLTPSDTSTHGGFSVLRRHANEClppldmtQ--SPPSQELVAKDLHGMEWRFRHIFRGGPRKHLLTtSGWSAFVSSKRLVAGDAFVFL--RGENGEL 258 99****************************9543..455679***********************777659********************..449999* PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+r+ 462866040 259 RVGVRRA 265 ****996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-38 | 155 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-39 | 157 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.21E-22 | 161 | 264 | No hit | No description |
SMART | SM01019 | 4.4E-25 | 163 | 266 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-21 | 163 | 265 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.73 | 163 | 266 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MLATAMAPSP TPEPAYQSGD QLYSDLWHAC AGPLATVPRP GDLVFYFPQG HIEQVHAAAS 60 VLPLPPRLEL ARNVRGSDSL LFRAVTLQVA VATNQVAQNQ TCLYNLPSKM LCRVLNVELK 120 AEPDTDEVYA QIMLTAEPEW RQPRRRVRSG SIATLPRPAV RSFCKTLTPS DTSTHGGFSV 180 LRRHANECLP PLDMTQSPPS QELVAKDLHG MEWRFRHIFR GGPRKHLLTT SGWSAFVSSK 240 RLVAGDAFVF LRGENGELRV GVRRAMKQLS NVPSSVISSQ SLHLEVLATA WHAINKGHMF 300 TVYYKPRNV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-109 | 20 | 308 | 17 | 268 | Auxin response factor 1 |
4ldy_B | 1e-109 | 20 | 308 | 17 | 268 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462866040 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971148.1 | 1e-141 | auxin response factor 4 isoform X2 | ||||
Swissprot | Q5JK20 | 1e-134 | ARFD_ORYSJ; Auxin response factor 4 | ||||
TrEMBL | K3XEZ9 | 1e-139 | K3XEZ9_SETIT; Auxin response factor | ||||
STRING | Si000340m | 1e-139 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62000.3 | 1e-113 | auxin response factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|