PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462865514

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

FAR1

Protein Properties

Length: 372aa MW: 40057.4 Da PI: 6.7863

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462865514	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.2	4.1e-11	34	82	40	90
FAR1 40 kreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 r++e+ ++ e+ tr+etr++C a++k++++ dg +++++++ +HnH la 462865514 34 DRRTESP-DHVESFTRPETRCQCPARMKISLR-DGFYYIYEFVADHNHILA 82 3333333.467888****************.*************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-7	36	82	IPR004330	FAR1 DNA binding domain
SuperFamily	SSF51695	2.88E-30	196	362	IPR017946	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
Gene3D	G3DSA:3.20.20.190	1.0E-22	197	363	IPR017946	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
PROSITE profile	PS51704	27.915	198	372	IPR030395	Glycerophosphodiester phosphodiesterase domain
Pfam	PF03009	2.5E-16	203	361	IPR030395	Glycerophosphodiester phosphodiesterase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006629	Biological Process	lipid metabolic process
GO:0008081	Molecular Function	phosphoric diester hydrolase activity

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MAPPIVPTPS IAAAVNSSSN SSVMSDLPGV REKDRRTESP DHVESFTRPE TRCQCPARMK 60 ISLRDGFYYI YEFVADHNHI LATAEEAHHL RSQRKITEAQ LASIEDAKAV GISNKAAFEQ 120 MAKEAGGMEN LGFTRVDMKN KLYSKSYDPS AEYLQFIENL DFSVDGFLTD FPPTASGAVA 180 CLAHSKGNPL PPPERPRPLI ISHNGASGVF PGSTDLAYQQ AMKDGADIID CTVQMSKDGI 240 AFCMPSADLG SCTTAGSAFI SKGSTVHQIQ NKSGIFSFDL SWSEIQTLKP DLVGPFAQSG 300 LKRNPAAKNA GKFMTLPGFL DMAKASNVSG ILIDIEHAAY LATRGLGVVD AVTGALTKAG 360 YDKETKQRKP MQ

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MAPPIVPTPS IAAAVNSSSN SSVMSDLPGV REKDRRTESP DHVESFTRPE TRCQCPARMK  60
ISLRDGFYYI YEFVADHNHI LATAEEAHHL RSQRKITEAQ LASIEDAKAV GISNKAAFEQ  120
MAKEAGGMEN LGFTRVDMKN KLYSKSYDPS AEYLQFIENL DFSVDGFLTD FPPTASGAVA  180
CLAHSKGNPL PPPERPRPLI ISHNGASGVF PGSTDLAYQQ AMKDGADIID CTVQMSKDGI  240
AFCMPSADLG SCTTAGSAFI SKGSTVHQIQ NKSGIFSFDL SWSEIQTLKP DLVGPFAQSG  300
LKRNPAAKNA GKFMTLPGFL DMAKASNVSG ILIDIEHAAY LATRGLGVVD AVTGALTKAG  360
YDKETKQRKP MQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462865514

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683599.1	1e-128	glycerophosphodiester phosphodiesterase GDPDL7
Swissprot	Q9LVN0	8e-88	GPDL7_ARATH; Glycerophosphodiester phosphodiesterase GDPDL7
TrEMBL	A0A1D6H2W4	1e-125	A0A1D6H2W4_MAIZE; Glycerophosphodiester phosphodiesterase GDPDL3
TrEMBL	A0A2S3GLX7	1e-124	A0A2S3GLX7_9POAL; Uncharacterized protein
TrEMBL	A0A2T7F2W5	1e-124	A0A2T7F2W5_9POAL; Uncharacterized protein
STRING	Pavir.Aa03117.1.p	1e-127	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-13	FAR1-related sequence 5

Publications ? help Back to Top
Lalanne E, et al. SETH1 and SETH2, two components of the glycosylphosphatidylinositol anchor biosynthetic pathway, are required for pollen germination and tube growth in Arabidopsis. Plant Cell, 2004. 16(1): p. 229-40 [PMID:14671020] Hayashi S, et al. The glycerophosphoryl diester phosphodiesterase-like proteins SHV3 and its homologs play important roles in cell wall organization. Plant Cell Physiol., 2008. 49(10): p. 1522-35 [PMID:18718934] Cheng Y, et al. Characterization of the Arabidopsis glycerophosphodiester phosphodiesterase (GDPD) family reveals a role of the plastid-localized AtGDPD1 in maintaining cellular phosphate homeostasis under phosphate starvation. Plant J., 2011. 66(5): p. 781-95 [PMID:21323773] Ge W, et al. Proteomic analyses of apoplastic proteins from germinating Arabidopsis thaliana pollen. Biochim. Biophys. Acta, 2011. 1814(12): p. 1964-73 [PMID:21798377]