PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462865445 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 26002.8 Da PI: 8.0731 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.2 | 4.3e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstgk++ey+s 462865445 9 KRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 49.6 | 1.7e-17 | 133 | 223 | 1 | 95 |
K-box 1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq+s++++ e ++ ++ e++++k+e+++L++ +R++ G+dL+sL+l +++ LeqqLe s++ K+ell++q+++l++ke+ l+++n L 462865445 133 YQHSTNNHfEEINHDQQIFMEMTRMKNEVDQLETGLRRFTGDDLSSLTLTDINDLEQQLELSVT-----KHELLTQQLDNLRRKEHILEDQNSILC 223 677777777788889999******************************************9995.....9**********************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.282 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-29 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.51E-38 | 2 | 60 | No hit | No description |
PRINTS | PR00404 | 2.1E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-16 | 143 | 224 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.054 | 147 | 225 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGRGKIEIKR IENSTNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGKMFEYCSP 60 TSRLGFVPRS SPSNLCCLRT HPASCSLQYV LKCRSISVFL STQDIIFSVQ FDLSRFAQKQ 120 LHVAFLRELI EQYQHSTNNH FEEINHDQQI FMEMTRMKNE VDQLETGLRR FTGDDLSSLT 180 LTDINDLEQQ LELSVTKHEL LTQQLDNLRR KEHILEDQNS ILCRM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-18 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 6e-18 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 6e-18 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 6e-18 | 1 | 59 | 1 | 59 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462865445 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU962253 | 2e-80 | EU962253.1 Zea mays clone 241317 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794853.1 | 6e-85 | MADS-box protein ZMM17-like | ||||
Swissprot | Q6H711 | 5e-50 | MAD29_ORYSJ; MADS-box transcription factor 29 | ||||
TrEMBL | A0A2S3GLI7 | 1e-83 | A0A2S3GLI7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2S3GM15 | 1e-83 | A0A2S3GM15_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7F2H1 | 1e-83 | A0A2T7F2H1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7F2H4 | 1e-83 | A0A2T7F2H4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab00475.1.p | 3e-83 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 1e-35 | MIKC_MADS family protein |