PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462865345
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 901aa    MW: 99379.6 Da    PI: 5.9194
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462865345genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.13.9e-24118219199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae+        +++++  ++l  +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+
  462865345 118 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELFAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDNNQLL 213
                99*****************************8544444..49************************************************..7777778* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  462865345 214 LGIRRA 219
                **9997 PP
2Auxin_resp121.85.2e-40244327183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
   462865345 244 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 327
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-48103247IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-43110233IPR015300DNA-binding pseudobarrel domain
CDDcd100175.63E-22117218No hitNo description
PfamPF023629.4E-23118219IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155118220IPR003340B3 DNA binding domain
SMARTSM010194.9E-25118220IPR003340B3 DNA binding domain
PfamPF065078.0E-35244327IPR010525Auxin response factor
SuperFamilySSF542771.44E-8759845No hitNo description
PfamPF023091.4E-7765854IPR033389AUX/IAA domain
PROSITE profilePS5174524.264769853IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
GFSEAEEHKC LNSELWHACA GPLVSLPAVG SRVVYFPQGH GEQVAASTNK EMEAQIPNYP  60
SLPPQLICQL HNVTMHADAE TDEVYAQMTL QPLSPQELKD PFLPADLGTA SKQPTNYFCK  120
TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELFA KDLHGNEWKF RHIFRGQPKR  180
HLLTTGWSVF VSAKRLVAGD SVLFIWNDNN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL  240
LAAAAHAAST NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRISVGMRFR MLFETEESSV  300
RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGEKQP RVSLWDIEPL TTFPMYPSPF  360
ALGLKRPWPT GLPSLYGAKD DGLASSLMWL RGSANPGFQS LNFGGLGSSP WMQPRMDNSL  420
LGLQPDMYQT IAAAAALQSS VKQISPAVMQ FQQPQNTAGR SPLLSSQILQ QIQPQVQQLY  480
HQNVNDNTIQ GHSQSEYLQQ QLQHCQSFNE QKLHLQPQEQ QHESHDHHQQ QQGVQSPQNQ  540
QIQQQKHLLN FQSLPNALPV FSQFSSATQS PASTLPTVSA FSQQQNIPDT NNGSLMPSDL  600
SAMHEMLRPL PSEATSSISG VARTTPVQVS DPWSSKRVAV ESVIPSRPNV VSPPIEQLDM  660
APCSVPQSSA LAPLPGRECL VDQDGSSDPQ NHLLFGVNID SQSLLMQGGI PSLQNDTGSS  720
TIQYSTSSFM SPSQNDFPLN QALTNPGCLD ESGYVPCAES SEQVNEPPAT FVKVYRSGTL  780
GRLLDITRFN SYDELRSEVG RLFGLEGQLE DPLRSGWQLV FVDREDDVLL VGDDPWQEFV  840
NSVSCIKILS PEEVQQMGKQ GIQLLSSAPA RRLGNGCDSY MSRQESRNLS TGMAPVGSVE  900
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621134851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462865345
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823935.10.0auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2S3GLJ50.0A0A2S3GLJ5_9POAL; Auxin response factor
STRINGSb04g004430.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]