PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462865258 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 316aa MW: 35442.6 Da PI: 9.0829 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 32 | 81 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g 462865258 32 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDQAAIKFRG 81 78*******************......55************************997 PP | |||||||
2 | AP2 | 38.7 | 2.6e-12 | 124 | 174 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++k g+W+++I +k+++lg ++t+ eAa+ +++a+ + +g 462865258 124 SRYRGVTQHK-CGKWESRIGQlM----GKKYVYLGLYDTEMEAAQVYDKAAIRCFG 174 79********.7****9976633....25**********77**********98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-9 | 32 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-16 | 32 | 90 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.57 | 33 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-32 | 33 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-17 | 33 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.25E-12 | 33 | 88 | No hit | No description |
Pfam | PF00847 | 3.6E-7 | 124 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-16 | 124 | 183 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.21E-23 | 124 | 184 | No hit | No description |
PROSITE profile | PS51032 | 15.013 | 125 | 182 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.3E-32 | 125 | 188 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-16 | 125 | 182 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-6 | 126 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-6 | 164 | 184 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MEQCHAVAAV AADPWARPAL RKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG 60 GFDTAHAAAR AYDQAAIKFR GVSADINFTL DDYKDDIKKM KNFSKEEFVQ VLRRQGAGFV 120 RGSSRYRGVT QHKCGKWESR IGQLMGKKYV YLGLYDTEME AAQVYDKAAI RCFGKEAVTN 180 FDPQTYDNEL QLQYGELDLE LSLGCAGGGR GGNPTTVADE AFISAPGKQR TSLTFELPEE 240 QDETIAGYPY RSIRTRPSQS PATPNGGAFG HHPADDHARI SGSWSALHVL HMVRSLITAH 300 RNHQTESHEE RRTNAC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462865258 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ZMU41466 | 1e-167 | U41466.1 Zea mays Glossy15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657174.2 | 1e-138 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
Swissprot | A0A0N7KMH0 | 1e-133 | AP24_ORYSJ; APETALA2-like protein 4 | ||||
TrEMBL | A0A3L6RYR2 | 1e-143 | A0A3L6RYR2_PANMI; Uncharacterized protein | ||||
STRING | OB06G29960.1 | 1e-136 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11821 | 34 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 2e-82 | AP2 family protein |
Publications ? help Back to Top | |||
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