PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462864935
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 465aa    MW: 53076.7 Da    PI: 8.6243
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462864935genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.89.2e-122770347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      WT+ Ed  l + +k +G  +W ++a  ++ gRt+ qc+ rw + 
        462864935 27 GWTPLEDSALEEMIKVYGQQNWVAVATGVP-GRTGRQCRGRWINN 70
                     6*****************************.***********986 PP
2Myb_DNA-binding49.88e-1678119145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eEd  l++a+k  G+  Wk+Ia+ +g  R+++++k++w+
        462864935  78 KNKWTEEEDNNLIEAHKICGNS-WKAIANFLG--RSENSVKNHWN 119
                      689*****************99.********8..**********8 PP
3Myb_DNA-binding262.1e-08146184847
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++  l + +k +G  +W ++a  ++ gRt+ qc+ rw + 
        462864935 146 LEVALEEMIKVYGQQNWVAVATGVP-GRTGRQCRGRWINN 184
                      5678999******************.***********986 PP
4Myb_DNA-binding49.88e-16192233145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eEd  l++a+k  G+  Wk+Ia+ +g  R+++++k++w+
        462864935 192 KNKWTEEEDNNLIEAHKICGNS-WKAIANFLG--RSENSVKNHWN 233
                      689*****************99.********8..**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.8622071IPR017930Myb domain
SMARTSM007172.5E-122473IPR001005SANT/Myb domain
SuperFamilySSF466897.81E-2425118IPR009057Homeodomain-like
PfamPF002497.9E-112771IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-162872IPR009057Homeodomain-like
CDDcd001672.29E-102871No hitNo description
PROSITE profilePS5129417.71172126IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.2E-1573122IPR009057Homeodomain-like
SMARTSM007174.8E-1577124IPR001005SANT/Myb domain
PfamPF002492.6E-1478119IPR001005SANT/Myb domain
CDDcd001673.76E-1080122No hitNo description
SMARTSM007173.7E-5139187IPR001005SANT/Myb domain
PfamPF002493.9E-7147185IPR001005SANT/Myb domain
CDDcd001679.90E-7147185No hitNo description
PROSITE profilePS500907.596147185IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-11149186IPR009057Homeodomain-like
SuperFamilySSF466893.63E-21165238IPR009057Homeodomain-like
PROSITE profilePS5129417.711186240IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-14187236IPR009057Homeodomain-like
SMARTSM007174.8E-15191238IPR001005SANT/Myb domain
PfamPF002492.6E-14192233IPR001005SANT/Myb domain
CDDcd001673.76E-10194236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MAHEYQEVVH HNSGGTKGQT VSPLKEGWTP LEDSALEEMI KVYGQQNWVA VATGVPGRTG  60
RQCRGRWINN LRPGIQEKNK WTEEEDNNLI EAHKICGNSW KAIANFLGRS ENSVKNHWNA  120
TKRSIGSRRW VKKKMREQTF CQFTALEVAL EEMIKVYGQQ NWVAVATGVP GRTGRQCRGR  180
WINNLRPGIQ EKNKWTEEED NNLIEAHKIC GNSWKAIANF LGRSENSVKN HWNATKRSIG  240
SRRWVKKKMR EQTFCQFTAL EVYIGSLCMN SQPEQLGSDP GHQQQAFPNT FVEPLVSNPH  300
AVGMYMNDGG VVPPQMMQDG LVGESNAINN IVPLSENAVW QSSNLGNSNG FSDEVVRIFI  360
PQNTKMKIDF DPIRDSWFHE VHDYYNWLII GGTKNRGRNS MEEFTSHHES GGRHRDSPRC  420
SPHQILALSC FHAAFQIWVH GDKGYMINGW EDFVINYILN RKDGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25242416110B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMap462864935
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.13e-31myb domain protein 115