PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462864929
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 436aa    MW: 48212.4 Da    PI: 5.3886
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462864929genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.1e-153175146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+WT+ Ed  l++ v+ +G ++W++Ia+ ++ gRt+ qc++rw +
        462864929 31 KGAWTPLEDSALKERVRVYGQRNWAAIAKGVP-GRTGRQCRERWIN 75
                     79******************************.***********87 PP
2Myb_DNA-binding48.12.7e-1584125145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eEd  l++a+  +G+  Wk+Ia+ +g  R+++++k++w+
        462864929  84 KNKWTEEEDNNLIHAHMIFGNS-WKAIASFLG--RSENSIKNHWN 125
                      689*****************99.********8..**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.9622681IPR017930Myb domain
SuperFamilySSF466891.72E-2530124IPR009057Homeodomain-like
SMARTSM007176.5E-163079IPR001005SANT/Myb domain
PfamPF002492.5E-143175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-193278IPR009057Homeodomain-like
CDDcd001671.56E-143377No hitNo description
Gene3DG3DSA:1.10.10.601.2E-1579128IPR009057Homeodomain-like
PROSITE profilePS5129415.22982132IPR017930Myb domain
SMARTSM007179.0E-1583130IPR001005SANT/Myb domain
PfamPF002494.3E-1484125IPR001005SANT/Myb domain
CDDcd001672.54E-1186128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MENSILNQQF GGFPVHHNAG GSNGQTVSPL KGAWTPLEDS ALKERVRVYG QRNWAAIAKG  60
VPGRTGRQCR ERWINKLRPG IKEKNKWTEE EDNNLIHAHM IFGNSWKAIA SFLGRSENSI  120
KNHWNATKRS LGSRCWIKNK TKEKPFGQFT ALEEYIGNLR VNSQPEQLGS DPGHQQQVFP  180
NTVVEPLVSN PHAVDMCMKD GGVVPSPMMQ DGLVHPNVLA STTSFNPPNM GMYSNSATLD  240
ETQAMQSQVP FYRPTFTDHL NYPVQQNMVS CQHPLGTNIN FNYPGQQNSM SYQDPQGTYK  300
NLNYPLSENV TCQSSYQANS NWFNNEIGAS SIGGNIVPFS ENVGLQCPNL GNSNGISNQV  360
GESSAVNNIV PLSENAVWQS SNPGNSNGFN NEVCESSAGG NTLSDDIDDV QVASIMNWFI  420
PFEDDDALEF DKFVLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28301276103B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMap462864929
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.13e-36myb domain protein 115