PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462864810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 21197.9 Da PI: 7.3377 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.7 | 1.3e-40 | 26 | 126 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+ rr+Ca+dCv+apyf +++ +++fa vh++FGa +v kll+++p+++r da+sslvyeA+ar+rdPvyG+v+ i++lqqq+e+l+a+lal+++ 462864810 26 PCAACKMYRRRCAEDCVFAPYFTSSKaAQDFADVHRVFGAGRVRKLLQEIPDQHRGDAVSSLVYEANARVRDPVYGCVAAISSLQQQVETLQAQLALAQA 125 7*********************998868*********************************************************************998 PP DUF260 100 e 100 e 462864810 126 E 126 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.198 | 25 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-39 | 26 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MTETAAVVAD GARAGVQGAG GGRATPCAAC KMYRRRCAED CVFAPYFTSS KAAQDFADVH 60 RVFGAGRVRK LLQEIPDQHR GDAVSSLVYE ANARVRDPVY GCVAAISSLQ QQVETLQAQL 120 ALAQAEMVRL NMNNAYMAHR LKATRGCGGT STNTGSPSSM SSPKTEQPEA HCKATPELLD 180 MVVDQPYSMD DSQLWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-39 | 22 | 129 | 7 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-39 | 22 | 129 | 7 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462864810 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982247.1 | 4e-70 | LOB domain-containing protein 4 | ||||
Swissprot | Q8LBW3 | 8e-46 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A3L6TSK8 | 3e-76 | A0A3L6TSK8_PANMI; LOB domain-containing protein 4-like | ||||
STRING | Pavir.Ib04170.1.p | 3e-70 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-40 | LOB domain-containing protein 4 |
Publications ? help Back to Top | |||
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