PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462864658 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 97aa MW: 11512.3 Da PI: 12.549 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.4e-16 | 29 | 72 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rgr T++E+ l+++++ ++G++ W++Iar ++ gRt++++k++w++ 462864658 29 RGRITADEERLILELHGKWGSR-WSRIARSLP-GRTDNEIKNFWRT 72 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.426 | 1 | 23 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.7E-20 | 9 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-10 | 9 | 35 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.504 | 24 | 78 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-13 | 28 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-14 | 29 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.10E-9 | 33 | 72 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-18 | 36 | 74 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MGFSGAGLKR TGKSCRLRWV NYLHPGLRRG RITADEERLI LELHGKWGSR WSRIARSLPG 60 RTDNEIKNFW RTRTRKMALE QRRHGHSPAP RTRPRRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-16 | 10 | 76 | 37 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-16 | 10 | 76 | 37 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 1e-16 | 10 | 76 | 37 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462864658 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728194 | 2e-78 | KJ728194.1 Zea mays clone pUT6468 MYB transcription factor (MYB21) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680579.1 | 9e-45 | LOW QUALITY PROTEIN: transcription factor MYB59 | ||||
Swissprot | Q4JL84 | 4e-38 | MYB59_ARATH; Transcription factor MYB59 | ||||
Swissprot | Q9LX82 | 6e-38 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | K3ZD38 | 2e-43 | K3ZD38_SETIT; Uncharacterized protein | ||||
STRING | Si024470m | 3e-44 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.3 | 8e-41 | myb domain protein 48 |
Publications ? help Back to Top | |||
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