PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462864419 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 309aa MW: 33021.8 Da PI: 5.8419 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54 | 4.3e-17 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr +k +grWv+eIr p++ r r++lg++ +ae+Aa+a +aa+ +l+g 462864419 21 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 70 8******99.**********933...5*************************98 PP | |||||||
2 | AP2 | 54 | 4.3e-17 | 110 | 159 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr +k +grWv+eIr p++ r r++lg++ +ae+Aa+a +aa+ +l+g 462864419 110 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 159 8******99.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.58E-17 | 20 | 81 | No hit | No description |
SMART | SM00380 | 2.2E-32 | 21 | 85 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-27 | 21 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-18 | 21 | 80 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.1E-10 | 21 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.865 | 21 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-8 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-8 | 44 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.58E-17 | 109 | 170 | No hit | No description |
SMART | SM00380 | 2.2E-32 | 110 | 174 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-27 | 110 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-18 | 110 | 169 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.865 | 110 | 168 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-10 | 110 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0002213 | Biological Process | defense response to insect | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MADEGAGASR GGEGSSPPEK RYKGVRLRKW GRWVSEIRMP NSRERIWLGS YESAEKAARA 60 FDAAAVCLRG SRAGSLNFPE SPPNVRYIPA AQLTPELIQA EAGSSPPEKR YKGVRLRKWG 120 RWVSEIRMPN SRERIWLGSY ESAEKAARAF DAAAVCLRGS RAGSLNFPES PPNVRYIPAA 180 QLTPELIQAE AVRHANQPAS PAAAATAAAS SPQDAAHAGG GNNDRAALSV PASSTYSGVD 240 DALDWSFMDT LPSMSAPSSA GTSSELVPAM DDFMYGSPHP VMPPGVDGAP GMIDGDDDNT 300 FIGDDLWRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-13 | 10 | 80 | 3 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462864419 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728382 | 5e-82 | KJ728382.1 Zea mays clone pUT6665 AP2-EREBP transcription factor (EREB199) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973610.1 | 4e-89 | ethylene-responsive transcription factor ERF018 | ||||
Swissprot | Q84QC2 | 5e-30 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
Swissprot | Q9S7L5 | 5e-30 | ERF18_ARATH; Ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | A0A3L6PN73 | 9e-88 | A0A3L6PN73_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Fb01602.1.p | 4e-91 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 3e-21 | ERF family protein |