PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462864342
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARR-B
Protein Properties Length: 204aa    MW: 23322.8 Da    PI: 7.2748
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462864342genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like22.91.9e-07181202122
    G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                ++rl+W+ +LH+ Fve+v++LG
  462864342 181 RQRLQWSVQLHRIFVEVVHRLG 202
                58*******************6 PP
2Response_reg745.8e-25121221108
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                   vl vdD+ + ++l+++ l++ +y +v+++  ++ ale+l++++     +Dl+++D+  pgmdG++ll+ i  e  ++p+i+++a+++ e++ + +k 
     462864342  12 VLAVDDDCVSLMLIEKQLQRFKY-KVTTVMRADTALEMLRARRdaedkFDLVITDVHTPGMDGFKLLELIGLEM-DIPVIMLSANDKLETMMKGIKH 106
                   799********************.***************888888889**********************6644.8********************* PP

                   TESEEEESS--HHHHH CS
  Response_reg  93 GakdflsKpfdpeelv 108
                   Ga  +l+Kp + e++ 
     462864342 107 GACNYLVKPAPLEQVK 122
                   *********9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-359161No hitNo description
SuperFamilySSF521728.68E-319131IPR011006CheY-like superfamily
SMARTSM004482.9E-2410125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.59511129IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2012121IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.06E-2313122No hitNo description
Gene3DG3DSA:1.10.10.608.4E-6179203IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDVDAFRAKL HVLAVDDDCV SLMLIEKQLQ RFKYKVTTVM RADTALEMLR ARRDAEDKFD  60
LVITDVHTPG MDGFKLLELI GLEMDIPVIM LSANDKLETM MKGIKHGACN YLVKPAPLEQ  120
VKNLWIHVVR KNVNGPSDSI NNYDDGHHQS QSEDSEDGSV GKSSRKKKKE DGTRENKEAK  180
RQRLQWSVQL HRIFVEVVHR LGID
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169RKKKKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462864342
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812920.12e-67two-component response regulator ORR25-like isoform X1
RefseqXP_025812922.12e-67two-component response regulator ORR24-like isoform X2
SwissprotA2X1N25e-55ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8055e-55ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A2S3HI733e-66A0A2S3HI73_9POAL; Uncharacterized protein
STRINGSi008512m9e-65(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1204346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-48response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]