PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462864309
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 70aa    MW: 8131.17 Da    PI: 4.6831
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462864309genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-092454131
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                     rg+WT eEd ll ++++ +G g+W++ ar+ 
        462864309 24 RGPWTLEEDNLLMNYIACHGEGRWNLLARCS 54
                     89**************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-111653IPR009057Homeodomain-like
PROSITE profilePS500907.0621952IPR017877Myb-like domain
SuperFamilySSF466897.9E-91953IPR009057Homeodomain-like
PfamPF002494.5E-72452IPR001005SANT/Myb domain
CDDcd001677.48E-52653No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MSQRKGTMAV TSKQQQQEEM ELRRGPWTLE EDNLLMNYIA CHGEGRWNLL ARCSEDWQEL  60
PAQVAQLPQA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462864309
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794271e-48HF679427.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB21 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814736.11e-24transcription factor MYB2-like
SwissprotQ9FGY31e-14MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A2S3HXI23e-23A0A2S3HXI2_9POAL; Uncharacterized protein
STRINGPavir.Ea00660.1.p3e-24(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.16e-17myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]