PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462863240
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 400aa    MW: 43527.3 Da    PI: 4.4475
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462863240genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-19135185155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +g++GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa+a+++a+++++g
  462863240 135 CGFRGVRQRT-WGKWVAEIREP---N-RvNRLWLGTFPTAEDAARAYDEAARAMYG 185
                79*****999.**********8...2.489***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.12E-30135193No hitNo description
PfamPF008475.9E-13135185IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-21136194IPR016177DNA-binding domain
SMARTSM003809.6E-33136199IPR001471AP2/ERF domain
PROSITE profilePS5103222.26136193IPR001471AP2/ERF domain
PRINTSPR003675.2E-10137148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-31137194IPR001471AP2/ERF domain
PRINTSPR003675.2E-10159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
GFPPVSLFSS PNFLTTFLLS SRELVATRPA PADTIAYPSN PAAVFRPAMT VDQKQAMPAQ  60
MQQQQVQTLQ PGRKKRPRRS RDGPTSVKAV IERWAQLNQQ LEHDPEAAKR PRKAPAKGSK  120
KGCMKGKGGP DNTVCGFRGV RQRTWGKWVA EIREPNRVNR LWLGTFPTAE DAARAYDEAA  180
RAMYGAVART NFPSEHASTS TQVAPAAAES ALQSVSCEST TTSNHSDIVS SHKPEVSDSS  240
SSLNTQSEAL EIVPLEPKTE SATLEQSGDG HLGLEAGASS GPGTSSVVDE VFEPLEPITN  300
LPHGNDEGFD IDEMLRMMEA DPQNEGLWDQ LQDEANDGGA KPGPEQPFFI DGLDSSVLEN  360
MLQAEPEPEP WLMSEEPDMY LTGFQNPDFF EGCDFLEGLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-15137193360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-151371961575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462863240
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302434.11e-134dehydration-responsive element-binding protein 2B-like isoform X4
SwissprotQ5W6R42e-90DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLA0A1N7TB581e-162A0A1N7TB58_9POAL; Transcription factor DREB2.3
STRINGSi022619m1e-127(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.18e-28DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]