PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462862877

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB

Protein Properties

Length: 341aa MW: 37530.6 Da PI: 6.0494

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462862877	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.3e-18	56	103	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ l+++++q+G g+W++ ar g++Rt+k+c++rw++yl 462862877 56 RGPWTVDEDLTLINYIAQHGDGRWNALARAAGLKRTGKSCRLRWLNYL 103 89********************************************97 PP
2	Myb_DNA-binding	51	3.3e-16	109	152	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T++E++l++d++ ++G++ W++Ia+ ++ gRt++++k++w++ 462862877 109 RGDFTADEQLLILDLHSRWGNR-WSKIAAQLP-GRTDNEIKNYWRT 152 899*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.794	51	103	IPR017930	Myb domain
SuperFamily	SSF46689	5.62E-30	54	150	IPR009057	Homeodomain-like
SMART	SM00717	5.6E-15	55	105	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-16	56	103	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.2E-23	57	110	IPR009057	Homeodomain-like
CDD	cd00167	6.26E-11	58	103	No hit	No description
PROSITE profile	PS51294	23.021	104	158	IPR017930	Myb domain
SMART	SM00717	1.9E-14	108	156	IPR001005	SANT/Myb domain
Pfam	PF00249	8.3E-15	109	152	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-23	111	156	IPR009057	Homeodomain-like
CDD	cd00167	3.20E-10	112	152	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MEMVLQPRGG AAAGASSTTA CRPGRASPPP PPRKMMTMKR EAEEDDAAAA EGELRRGPWT 60 VDEDLTLINY IAQHGDGRWN ALARAAGLKR TGKSCRLRWL NYLRPDVKRG DFTADEQLLI 120 LDLHSRWGNR WSKIAAQLPG RTDNEIKNYW RTRVQKHARQ LGCDVNSRRF KDAMAYLWMP 180 RLAERAAASQ AQQQAAATCI TKASCPDLSA TTADCLAKNS SNYYEHSPGA SGVVPSSSSS 240 DSSLTSTESA HEEKSVQLQN SNNDGDCWAT TMPGAEDHDE FWSAAAPALQ QLVINNDAGG 300 HHHQFQEDLT GWVQGFCDGI VSDAAADEQS LWSLDDIWRM Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-25	53	156	24	126	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269\|PubMed:11310740}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462862877

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269\|PubMed:11310740}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728414	1e-155	KJ728414.1 Zea mays clone pUT6719 MYB transcription factor (MYB4) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004979993.1	1e-107	transcription factor JAMYB
Swissprot	Q2QZJ8	5e-98	JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBL	K3ZJ21	1e-105	K3ZJ21_SETIT; Uncharacterized protein
STRING	Si026574m	1e-106	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48000.1	4e-74	myb domain protein 112

Publications ? help Back to Top
Ahn IP,Kim S,Kang S,Suh SC,Lee YH Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct. Phytopathology, 2005. 95(11): p. 1248-55 [PMID:18943354] Campos-Soriano L,García-Martínez J,San Segundo B The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection. Mol. Plant Pathol., 2012. 13(6): p. 579-92 [PMID:22212404] Yokotani N, et al. Role of the rice transcription factor JAmyb in abiotic stress response. J. Plant Res., 2013. 126(1): p. 131-9 [PMID:22847900] Wang D, et al. Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response. Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007 [PMID:26740780] Fred AK,Kiswara G,Yi G,Kim KM Screening Rice Cultivars for Resistance to Bacterial Leaf Blight. J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45 [PMID:26869604]