PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462862329
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 352aa    MW: 39000.2 Da    PI: 6.847
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462862329genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.53.9e-51101391128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL++  ++ +  ++e yfFs++dkky+tg+r+nrat++g+Wkatg+dk+++  + 
  462862329  10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKErcRIGTgPQNESYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLGSA 108
                69****************************.9***************95344444245599************************************999 PP

        NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                + +gl+ktLvfy grap+g+ktdW+mheyrl
  462862329 109 RRIGLRKTLVFYVGRAPHGKKTDWIMHEYRL 139
                99***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-577159IPR003441NAC domain
PROSITE profilePS5100556.2910159IPR003441NAC domain
PfamPF023651.4E-2611139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MHPNGGPLSV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKERCR  60
IGTGPQNESY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGSARR IGLRKTLVFY  120
VGRAPHGKKT DWIMHEYRLD EESVEIQEDG WVVCRVFKKK NYQRGLNPAD MAMLDGEELS  180
QLQAPVPGAM PTEHKHNPLL HYDFPSFDPP MQLPQLMNAD QPVPALYSGQ PGAGVAMGMS  240
SFDAECSQNL MKMTSSGGGE GMLHGGGGDG AGAGGGGVDH FASTTDWSIL DKLLASHQNL  300
DQLFQGKVTA ASAMPTTPYH HQLMELGSTS SLQRFPLQYL GGEAADLLRF PK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-48816115167NO APICAL MERISTEM PROTEIN
1ut4_B1e-48816115167NO APICAL MERISTEM PROTEIN
1ut7_A1e-48816115167NO APICAL MERISTEM PROTEIN
1ut7_B1e-48816115167NO APICAL MERISTEM PROTEIN
4dul_A1e-48816115167NAC domain-containing protein 19
4dul_B1e-48816115167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462862329
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8339651e-149AJ833965.1 Zea mays partial mRNA for hypothetical protein (nac6 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965525.10.0NAC domain-containing protein 76
SwissprotQ5Z6B61e-119NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLA0A1E5VJR10.0A0A1E5VJR1_9POAL; NAC domain-containing protein 76
STRINGSi007822m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.35e-97NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]