PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462862046 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 213aa MW: 24030.5 Da PI: 9.4905 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.4 | 6.7e-54 | 20 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel. 99 lppGfrFhP+dee++++yL++kv + ++++ +i e+di+k+ePw+Lp k+k +ekewyf++++d+ky+tg r+nrat+sgyWkatgkd+++++ +++ 462862046 20 LPPGFRFHPSDEEIITYYLTNKVCDGNFTA-ITIGEADINKSEPWELPFKAKMGEKEWYFYCRKDRKYPTGLRANRATESGYWKATGKDRKIYHGASSVp 118 79*************************999.78***************99999*****************************************744446 PP NAM 100 ..vglkktLvfykgrapkgektdWvmheyrl 128 g+kktLvfy grap+g+kt+Wvmheyrl 462862046 119 vlLGMKKTLVFYMGRAPSGVKTNWVMHEYRL 149 779**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-59 | 14 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.525 | 20 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-28 | 21 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MEDQHQLHQR RSGGAGGLVL PPGFRFHPSD EEIITYYLTN KVCDGNFTAI TIGEADINKS 60 EPWELPFKAK MGEKEWYFYC RKDRKYPTGL RANRATESGY WKATGKDRKI YHGASSVPVL 120 LGMKKTLVFY MGRAPSGVKT NWVMHEYRLD GKGGVPCPAA SSNTSPRNLV LHINKEEWVV 180 CRVCDKSLGI RKEPELAPVS APPHRMASMS DRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-48 | 18 | 192 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-48 | 18 | 192 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-48 | 18 | 192 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-48 | 18 | 192 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-48 | 18 | 192 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-48 | 18 | 192 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-48 | 18 | 192 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-48 | 18 | 192 | 18 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462862046 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801540.1 | 1e-83 | NAC domain-containing protein 79-like | ||||
Swissprot | Q9FLJ2 | 4e-75 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1E5V4C4 | 1e-83 | A0A1E5V4C4_9POAL; NAC domain-containing protein 79 | ||||
STRING | Pavir.Bb02033.1.p | 1e-81 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 2e-77 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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