PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462861707
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CPP
Protein Properties Length: 494aa    MW: 53503.1 Da    PI: 7.807
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462861707genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.51.3e-1363102141
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                k+kk+CnC++skClk+YCeCfaa+++C+  C+C++C N+ e
  462861707  63 KKKKHCNCRNSKCLKMYCECFAAQVYCDG-CNCSNCGNNIE 102
                589**************************.********865 PP
2TCR49.77.1e-16148187140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                k++kgC+Ckks ClkkYCeC++a++ Cs++C+C dCkN e
  462861707 148 KHNKGCHCKKSGCLKKYCECYQANVLCSKNCRCMDCKNFE 187
                589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.8E-1563103IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.9364188IPR005172CRC domain
PfamPF036382.3E-1065100IPR005172CRC domain
SMARTSM011142.0E-18148189IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.1E-12151186IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MEQGRNQQQP NQAAPAVGGE MKEPAAAAQQ LRPAAPGIPA ARPWPVVFTP TKPATEVKSV  60
TPKKKKHCNC RNSKCLKMYC ECFAAQVYCD GCNCSNCGNN IESENLRKEA IETLLARNPL  120
AFQPKIENGP SAHNVRKDNS GAVPVVPKHN KGCHCKKSGC LKKYCECYQA NVLCSKNCRC  180
MDCKNFEGSD ERKASIQVEY ASDRNHIKQG ASIIHNSTTG TSGYTYSPMR RKRTYEDALG  240
GKLNTAGVML EAQFRQGNPA DASLLPPSTG CDGHNATHSP SKSFNPSYRS PLANTIHLSE  300
VKDMVKQLVT ACKTEAETYT AVADNKVDET GGGKELHTND GLNNGHCNQQ DSKEAQTLAC  360
NEPSVKDSRP ASPATQALMC NEQDTTFGDD YRSSFPSISC DQDISEINVA QENLVLTGIR  420
DYLRVIITRG KINEHKSSSE AAIELGAQLD HGAAPSISPS KAEENDTSSN GTKTLRSLEG  480
AVRVIVLSWC CLVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-28561982133Protein lin-54 homolog
5fd3_B3e-28561982133Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462861707
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798802.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A2T7F4C20.0A0A2T7F4C2_9POAL; Uncharacterized protein
STRINGPavir.Ab00979.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.13e-71Tesmin/TSO1-like CXC domain-containing protein