PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462861626

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Trihelix

Protein Properties

Length: 467aa MW: 51827.4 Da PI: 6.2949

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462861626	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.2	6.8e-26	58	127	2	71
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W k+e+l Li++rrem+ +++++k++k+lWe++s++mr++gf rsp++C++kw+nl k++kk + +++ 462861626 58 WVKEETLSLIALRREMDAHFNTSKSNKHLWEAISARMRDQGFDRSPTMCTDKWRNLLKEFKKARSYARSS 127 **************************************************************99887764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.687	50	114	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	7.4E-5	51	117	IPR009057	Homeodomain-like
SMART	SM00717	9.8E-6	54	116	IPR001005	SANT/Myb domain
CDD	cd12203	9.48E-28	56	121	No hit	No description
Pfam	PF13837	1.0E-17	57	147	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MLLSGPPAAP TPAPLPPXXX XXXXXXXXXX XXXXXXAVGH DSSSRAAGSA PKKRAETWVK 60 EETLSLIALR REMDAHFNTS KSNKHLWEAI SARMRDQGFD RSPTMCTDKW RNLLKEFKKA 120 RSYARSSAGG AGGNGNAKMA YYKEIDDLLK RRGKAVGSGG SSCGGGAGKS PTSNSKIDSF 180 LQFPTDKGFE DANIPFGPVE ANGRSILSID DRLDDDRHPL PLTAADAVAT NGVNPWNWRD 240 TSTNGGDNQV TFGGRVILVK WGDYTKRIGI DGTAEAIKEV IKSAFGLRTR RAFWLEDEDE 300 VVRTLDRDMP IGTYTLHLDD GGDNQVTFGG RVILVKWGDY TKRIGIDGTA EAIKEVIKSA 360 FGLRTRRAFW LEDEDEVVRT LDRDMPIGTY TLHLDDGMTI KLCTFEDADR MTVRTEDKTF 420 YTEEDFRDFL SRRGWTLLRE YGGYRIADTL DDLRPGAIYQ GMGSLGD

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MLLSGPPAAP TPAPLPPXXX XXXXXXXXXX XXXXXXAVGH DSSSRAAGSA PKKRAETWVK  60
EETLSLIALR REMDAHFNTS KSNKHLWEAI SARMRDQGFD RSPTMCTDKW RNLLKEFKKA  120
RSYARSSAGG AGGNGNAKMA YYKEIDDLLK RRGKAVGSGG SSCGGGAGKS PTSNSKIDSF  180
LQFPTDKGFE DANIPFGPVE ANGRSILSID DRLDDDRHPL PLTAADAVAT NGVNPWNWRD  240
TSTNGGDNQV TFGGRVILVK WGDYTKRIGI DGTAEAIKEV IKSAFGLRTR RAFWLEDEDE  300
VVRTLDRDMP IGTYTLHLDD GGDNQVTFGG RVILVKWGDY TKRIGIDGTA EAIKEVIKSA  360
FGLRTRRAFW LEDEDEVVRT LDRDMPIGTY TLHLDDGMTI KLCTFEDADR MTVRTEDKTF  420
YTEEDFRDFL SRRGWTLLRE YGGYRIADTL DDLRPGAIYQ GMGSLGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-38	52	144	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462861626

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794722.1	0.0	trihelix transcription factor GT-4-like isoform X1
Swissprot	Q9FX53	1e-119	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A3L6S8N5	0.0	A0A3L6S8N5_PANMI; Trihelix transcription factor
STRING	Pavir.Ib01088.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-101	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]