PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462861481 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 367aa MW: 40780.2 Da PI: 10.7741 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.9e-19 | 135 | 185 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr+p + r kr +lg+f ta eAa a+++a+++++ge 462861481 135 AYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGSFPTAVEAAHAYDEAARAMYGE 185 59****999.**********8...3.35*************************996 PP | |||||||
2 | AP2 | 59.4 | 8.4e-19 | 247 | 296 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r kr +lg+f ta eAa a+++a+++++g 462861481 247 AYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGSFPTAVEAAHAYDEAARAMYG 296 59****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.1E-13 | 134 | 185 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.454 | 135 | 195 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-24 | 135 | 201 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-18 | 135 | 187 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.2E-9 | 136 | 147 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-26 | 136 | 185 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.79E-22 | 136 | 185 | No hit | No description |
PRINTS | PR00367 | 5.2E-9 | 158 | 174 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.8E-13 | 246 | 296 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.799 | 247 | 304 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-35 | 247 | 310 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-21 | 247 | 305 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-31 | 248 | 306 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.78E-26 | 248 | 306 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MERVEEQGGD SSGAQARKKR MRRKSTGPDS IAETIKRWKE HNQKLQEVNG PRKAPAKGSK 60 KGCMAGKGGP ENVNFRKKRM RRKSTGPDSI AETIKRWKEH NQKLQEVNGP RKAPAKGSKK 120 GCMAGKGGPE NVNCAYRGVR QRTWGKWVAE IREPNRGKRL WLGSFPTAVE AAHAYDEAAR 180 AMYGELVRKK RMRRKSTGPD SIAETIKRWK EHNQKLQEAN GARKAPAKGS KKGCMAGKGG 240 PENVNCAYRG VRQRTWGKWV AEIREPNRGK RLWLGSFPTA VEAAHAYDEA ARAMYGPTAR 300 VNFSESSADA NSGCTSALSL LASNVPPAAQ RSDDKDEVES VETEVHDVKI EVNDDLRSIH 360 VERKTLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-13 | 248 | 303 | 6 | 62 | ATERF1 |
3gcc_A | 1e-13 | 248 | 303 | 6 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462861481 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF512460 | 0.0 | EF512460.1 Buchloe dactyloides dehydration responsive element binding protein (DREB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968294.1 | 1e-103 | dehydration-responsive element-binding protein 2A isoform X1 | ||||
Swissprot | A2WL19 | 3e-89 | DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A | ||||
TrEMBL | A4ZZA1 | 1e-119 | A4ZZA1_9POAL; Dehydration responsive element binding protein | ||||
STRING | Si002067m | 1e-101 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7315 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 2e-33 | ERF family protein |