PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462861075
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 286aa    MW: 30951.3 Da    PI: 9.6551
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462861075genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17177210134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  462861075 177 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 210
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-13168211No hitNo description
SMARTSM004013.7E-16171225IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-14175210IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.268175207IPR000679Zinc finger, GATA-type
CDDcd002025.42E-15176227No hitNo description
PROSITE patternPS003440177202IPR000679Zinc finger, GATA-type
PfamPF003202.0E-15177210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSAIYMSQLS TTLPLMEGDH HQDHHHQGHF HAFTLPKDPT LLFPFVIGNS STSDSSLSYG  60
SPDHQMMRQH QAMLEPQHMI GGSSVASVFA TPFPTVESIR DDMIEPSSYD PYDMGKLQVG  120
RSLETGGNWT PPAKMRITRK ASADPGAAGM AVKKPRRRAQ AYEDMNSQPN LGVIRVCSDC  180
NTTKTPLWRS GPCGPKSLCN ACGIRQRKAR RAMMASAGVV SADGIKAATA TPSDAMAVHP  240
KVNKKEKRAD VDRSLPFKKR CKVVQDHATT VAAPVVAAAD VQATTV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462861075
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812836.11e-137putative GATA transcription factor 22
SwissprotQ6YW483e-67CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A0A9G6G01e-142A0A0A9G6G0_ARUDO; Uncharacterized protein
TrEMBLA0A1E5VZ481e-142A0A1E5VZ48_9POAL; Uncharacterized protein
STRINGPavir.Db01250.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-20GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]