PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462861057 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | WRKY | ||||||||
Protein Properties | Length: 338aa MW: 36412 Da PI: 8.4626 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.1 | 2.7e-31 | 91 | 149 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ 462861057 91 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPSMLVITYNSEHNHP 149 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 32.902 | 85 | 151 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.9E-31 | 87 | 151 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-26 | 88 | 151 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-38 | 90 | 150 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 92 | 149 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MQMPVLSPRE IRPYPGIMGG DTVKLGMPTT MMPGGLGVGP PCAFDAVAGL QMPSPRGGGI 60 KRRKNQARKV VCIPAPAALA GGRTTGEVVP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK 120 GCPARKQVER SRTDPSMLVI TYNSEHNHPW PTQRNALAGS TRSHHAKNNG NNSSACKNSS 180 SQDLQKPMVK AEPDQTAAAS ATTTTTSTSN STPATAVKEE EMVASEMEKG MQHATDHDAS 240 VTLDPSDLMQ QMFNQSYRPM IPEGGHHDDF FSDLAELESD PMSLIFSKEY LETKPGGEPG 300 KEMATPKSLA DPLFNMLDWG ATTAVANSAG SSIKQNER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-24 | 64 | 152 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 4e-24 | 64 | 152 | 2 | 80 | Disease resistance protein RRS1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462861057 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061983 | 1e-172 | BT061983.1 Zea mays full-length cDNA clone ZM_BFb0203F20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953547.1 | 1e-167 | probable WRKY transcription factor 14 | ||||
Swissprot | O64747 | 5e-69 | WRK35_ARATH; Probable WRKY transcription factor 35 | ||||
TrEMBL | K3YS51 | 1e-165 | K3YS51_SETIT; Uncharacterized protein | ||||
STRING | Si017095m | 1e-166 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2592 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 1e-67 | WRKY DNA-binding protein 35 |
Publications ? help Back to Top | |||
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