PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462860887 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 210aa MW: 22550.9 Da PI: 11.594 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.2 | 2.8e-31 | 18 | 160 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksgyWkatgkdkevls 94 lppGfrF+Ptdeelv +yL++k+ g +l++ vi+ v ++y+++Pwd+p a+e e yfF+ r ++ t ra t+sg+Wk gk+++v+ 462860887 18 LPPGFRFRPTDEELVLQYLRRKAFGVPLPA-AVIPVVaNLYSLDPWDIP---GASEGEKYFFAVRPASSGTAGVCARAksggaTASGRWKPAGKERPVVL 113 79****************************.7888888***********...3456799*******9999877555554555599**************9 PP NAM 95 k....kgelvglkktLvfy.........kgrapkgektdWvmheyrl 128 + ++ lvg+k+tL+f +++a g+ + Wvmheyrl 462860887 114 SrpcgGSFLVGVKRTLAFAprrgekkssRASAGAGRTAGWVMHEYRL 160 888877778**********9988776555677778899*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.24E-39 | 12 | 186 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.904 | 18 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-20 | 19 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MAKSAPVLVR HAGGVSALPP GFRFRPTDEE LVLQYLRRKA FGVPLPAAVI PVVANLYSLD 60 PWDIPGASEG EKYFFAVRPA SSGTAGVCAR AKSGGATASG RWKPAGKERP VVLSRPCGGS 120 FLVGVKRTLA FAPRRGEKKS SRASAGAGRT AGWVMHEYRL AAPLHKNGCS LADAEGEWVA 180 CRVFRKSRQQ QQQPRRRAGD GTAPRRNNFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-26 | 17 | 192 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-26 | 17 | 192 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-26 | 17 | 192 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-26 | 17 | 192 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-26 | 17 | 192 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-26 | 17 | 192 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-26 | 17 | 192 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-26 | 17 | 192 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-26 | 17 | 192 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-26 | 17 | 192 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-26 | 17 | 192 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-26 | 17 | 192 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-26 | 17 | 192 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-26 | 17 | 192 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462860887 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086571 | 7e-40 | BT086571.1 Zea mays full-length cDNA clone ZM_BFc0184N14 mRNA, complete cds. | |||
GenBank | DQ245491 | 7e-40 | DQ245491.1 Zea mays clone 16115 mRNA sequence. | |||
GenBank | DQ246095 | 7e-40 | DQ246095.1 Zea mays clone 16151 mRNA sequence. | |||
GenBank | EU970906 | 7e-40 | EU970906.1 Zea mays clone 353721 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820407.1 | 3e-89 | NAC domain-containing protein 18-like isoform X2 | ||||
TrEMBL | A0A2S3I4F7 | 7e-88 | A0A2S3I4F7_9POAL; Uncharacterized protein | ||||
STRING | Si014408m | 2e-88 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-28 | NAC domain containing protein 83 |