PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462860584
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 263aa    MW: 28907.5 Da    PI: 8.5375
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462860584genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed+llvd v+++G g+W+++ r+ g+ R++k+c++rw ++l
        462860584 15 KGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 62
                     79******************************************9996 PP
2Myb_DNA-binding46.49.1e-1568111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+  +++++ + G++ W++I+++++ gRt++++k++w++
        462860584  68 KGPFSPEEERHILRLHGLIGNK-WARISSHLP-GRTDNEIKNYWNT 111
                      79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.1641066IPR017930Myb domain
SuperFamilySSF466896.83E-3112109IPR009057Homeodomain-like
SMARTSM007171.6E-131464IPR001005SANT/Myb domain
PfamPF002493.4E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-221669IPR009057Homeodomain-like
CDDcd001675.22E-121762No hitNo description
PROSITE patternPS0017503039IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129416.28967117IPR017930Myb domain
SMARTSM007172.0E-1267115IPR001005SANT/Myb domain
PfamPF002494.7E-1468111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2470115IPR009057Homeodomain-like
CDDcd001674.81E-1070111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MARAGGGEGG GGLKKGPWTQ AEDKLLVDHV RRHGEGNWNA VRRETGLQRC GKSCRLRWAN  60
HLRPNLRKGP FSPEEERHIL RLHGLIGNKW ARISSHLPGR TDNEIKNYWN TRTQRAGLPL  120
YPPDIEREIA VLRAQNVNPF ADTEHTTNNT HAVLSAPLLF DASNPVHELP SNQFDTANGG  180
GGGTGLLESL MLGDGHLRAN TSMFRVGSMP ELMNREPGSR MLVHGDSDVT SQCAPGADLH  240
HGGKWDFVLG QLLLTLSPTI HSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26131155106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462860584
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738041e-134AK373804.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3044A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813892.12e-91transcription factor MYB97-like
SwissprotA2WW879e-59GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A0E0E5C51e-108A0A0E0E5C5_9ORYZ; Uncharacterized protein
STRINGOMERI06G23280.11e-109(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123972632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.17e-56myb domain protein 33