PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462860572
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 917aa    MW: 101362 Da    PI: 6.237
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462860572genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.36.9e-24134235199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g+ W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+
  462860572 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIAKDLHGNDWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDNNQLL 229
                99*****************************86555544..8************************************************..7777778* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  462860572 230 LGIRRA 235
                **9997 PP
2Auxin_resp121.75.3e-40260343183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
   462860572 260 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 343
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-48119263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-42126249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-21133234No hitNo description
SMARTSM010194.1E-24134236IPR003340B3 DNA binding domain
PfamPF023622.4E-22134235IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098134236IPR003340B3 DNA binding domain
PfamPF065078.2E-35260343IPR010525Auxin response factor
SuperFamilySSF542773.92E-7780862No hitNo description
PfamPF023092.6E-8783871IPR033389AUX/IAA domain
PROSITE profilePS5174523.164786870IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0009725Biological Processresponse to hormone
GO:0009725Biological Processresponse to hormone
GO:0009725Biological Processresponse to hormone
GO:0009725Biological Processresponse to hormone
GO:0009725Biological Processresponse to hormone
GO:0009725Biological Processresponse to hormone
GO:0009725Biological Processresponse to hormone
GO:0009725Biological Processresponse to hormone
GO:0009725Biological Processresponse to hormone
GO:0009725Biological Processresponse to hormone
GO:0009725Biological Processresponse to hormone
GO:0009725Biological Processresponse to hormone
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0005634Cellular Componentnucleus
GO:0005634Cellular Componentnucleus
GO:0005634Cellular Componentnucleus
GO:0005634Cellular Componentnucleus
GO:0005634Cellular Componentnucleus
GO:0005634Cellular Componentnucleus
GO:0005634Cellular Componentnucleus
GO:0005634Cellular Componentnucleus
GO:0005634Cellular Componentnucleus
GO:0005634Cellular Componentnucleus
GO:0005634Cellular Componentnucleus
GO:0005634Cellular Componentnucleus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003677Molecular FunctionDNA binding
GO:0003677Molecular FunctionDNA binding
GO:0003677Molecular FunctionDNA binding
GO:0003677Molecular FunctionDNA binding
GO:0003677Molecular FunctionDNA binding
GO:0003677Molecular FunctionDNA binding
GO:0003677Molecular FunctionDNA binding
GO:0003677Molecular FunctionDNA binding
GO:0003677Molecular FunctionDNA binding
GO:0003677Molecular FunctionDNA binding
GO:0003677Molecular FunctionDNA binding
GO:0003677Molecular FunctionDNA binding
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0005515Molecular Functionprotein binding
GO:0005515Molecular Functionprotein binding
GO:0005515Molecular Functionprotein binding
GO:0005515Molecular Functionprotein binding
GO:0005515Molecular Functionprotein binding
GO:0005515Molecular Functionprotein binding
GO:0005515Molecular Functionprotein binding
GO:0005515Molecular Functionprotein binding
GO:0005515Molecular Functionprotein binding
GO:0005515Molecular Functionprotein binding
GO:0005515Molecular Functionprotein binding
GO:0005515Molecular Functionprotein binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MRLSSSSGSV LPAQAASPEA VEEQKCLNSE LWHACAGPLV SLPTVGSRVV YFPQGHSEQV  60
AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLN PQELKDPYLP  120
AELGTANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH  180
GNDWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS  300
VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGERQPRVSL  360
WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT SSLVWLRDST NPGFQSLNFG  420
GLGMSPWMQP RLDASLLGMQ PDLYQTMATA GFQDPTKQLS PTILQFQQPQ NIAGRAAPLL  480
SSQVLQQVQP QFQQQQQQTY LQNISESTIH GQSQTEFLKQ QIQRSQSFNE QKNQLQPQQQ  540
QQESQHQQQS SQCMQVPQHQ QIQQQNMANF QPVSNALSAF SQLSSASQSS PMALQNILPF  600
SQAQSFADTN GSSLSPSNAS TMQNTLKPLS SEAASHLSMP RPTAIPVPDP WSSKRVAVES  660
LLPSRPQVTS QMEQLDSTPT SISQSSALAP LPGRGCLVDQ DGSTDPQNHL LFGVSIDSQS  720
LLMQGGIPNL QNGNDSTNIP YSTSNFLSPS QNDFPLDHTL NSSGCLDDPG YVPCSDNSDQ  780
VTRPPATFVK VYKSGTYGRS LDITRFSSYH ELRRELGHLF GLEGQLEDPL RSGWQLVFVD  840
REEDVLLVGD DPWQEFVNSV SCIKILSPQE VQQMGKGLEL LSSAPGRRLG SSCDDYVSRQ  900
ESRSLSTGIA SVGSVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1622736451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462860572
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811094.10.0auxin response factor 17
RefseqXP_025811095.10.0auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A2S3HH250.0A0A2S3HH25_9POAL; Auxin response factor
TrEMBLA0A2T7DV860.0A0A2T7DV86_9POAL; Auxin response factor
STRINGPavir.Da00065.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]