PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462860543 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 299aa MW: 33733.1 Da PI: 7.8103 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.7 | 6.5e-51 | 16 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhP+d+elv +yL+kk++g + + ++ +vd++k+ePwdLp + + kewyf+s rd+kyatg+r+nrat+sgyWkatgkd+ + 462860543 16 LPPGFRFHPRDDELVLDYLAKKLHGGGgslV---SiygcpTMVDVDLNKCEPWDLPDIACIGGKEWYFYSLRDRKYATGQRTNRATESGYWKATGKDRLI 112 79***********************996663...223343699*************6555689************************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r+ 462860543 113 SR-KGLLVGMRKTLVFYQGRAPKGKKTEWVMHEFRM 147 99.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-61 | 6 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.084 | 16 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-25 | 17 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MAAAAMNSPS MVEARLPPGF RFHPRDDELV LDYLAKKLHG GGGSLVSIYG CPTMVDVDLN 60 KCEPWDLPDI ACIGGKEWYF YSLRDRKYAT GQRTNRATES GYWKATGKDR LISRKGLLVG 120 MRKTLVFYQG RAPKGKKTEW VMHEFRMEGQ CDPTKLHFKE DWVLCRVFYK SRATIAKPPT 180 ESSSYNIDTA TTSLPPLIDN YNISFDQPSS VQNLEGYEQV PCFSNNPSQP SSSMNAPLSS 240 AMAADQEQHM GKSVKDVLMS QFSRFEGNVK RETPQSNFSQ DGFEYLAESG FTQMWNSFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-49 | 11 | 170 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-49 | 11 | 170 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-49 | 11 | 170 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-49 | 11 | 170 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-49 | 11 | 170 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-49 | 11 | 170 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-49 | 11 | 170 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-49 | 11 | 170 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-49 | 11 | 170 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-49 | 11 | 170 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-49 | 11 | 170 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-49 | 11 | 170 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-49 | 11 | 170 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-49 | 11 | 170 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462860543 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681432.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-87 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | K3XYG7 | 0.0 | K3XYG7_SETIT; Uncharacterized protein | ||||
STRING | Si006975m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 2e-88 | NAC domain containing protein 1 |