PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462860392
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 947aa    MW: 104775 Da    PI: 6.0695
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462860392genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23144245199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F   ++++ +l+v
  462860392 144 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldfSMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--RDEKSQLLV 240
                89*********************999*****9555555.49************************************************..4577778** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +v+r+
  462860392 241 GVRRA 245
                **996 PP
2Auxin_resp114.31.1e-37270352183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaas++  F+++YnPr+s+s Fv+++++++ka++++ svGmRf m+fete+ss+rr++Gt+vg+sd+dp+rWpnSkWr+L+
   462860392 270 AAHAASSGGSFTIYYNPRTSPSPFVIPLARYNKATYMQPSVGMRFAMMFETEESSKRRCTGTIVGISDYDPIRWPNSKWRNLQ 352
                 79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-44134273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-40137258IPR015300DNA-binding pseudobarrel domain
CDDcd100174.02E-21143244No hitNo description
PfamPF023622.0E-21144245IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52144246IPR003340B3 DNA binding domain
SMARTSM010197.4E-23144246IPR003340B3 DNA binding domain
PfamPF065072.6E-33270352IPR010525Auxin response factor
PROSITE profilePS5174524.137844928IPR000270PB1 domain
PfamPF023094.5E-9845931IPR033389AUX/IAA domain
SuperFamilySSF542771.83E-8862923No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    Send to blast
MASSLEKTTS GVLRNAAALL DEMQLMGETQ GSKKVMINSE LWHACAGPLV SLPQRGSLVY  60
YFPQGHSEQV AATTKKTPNS RIPNYPSLSS QLLCQVHNIT LHADKETDEI YAQMTLQPVH  120
SETDVFPIPT LGAYTKSKHP TEYFCKNLTA SDTSTHGGFS VPRRAAEKLF PQLDFSMQPP  180
NQELIVRDLH DNMWTFRHIY RGQPKRHLLT TGWSLFVGAK RLKAGDSVLF IRDEKSQLLV  240
GVRRAIRQQP ALSSSVLSTD SMHLGVLAAA AHAASSGGSF TIYYNPRTSP SPFVIPLARY  300
NKATYMQPSV GMRFAMMFET EESSKRRCTG TIVGISDYDP IRWPNSKWRN LQVEWDEHGY  360
GERPERVSIW DIETPENTLV FSSPTLNSKR QCLPNYGVPG LQVGPANMSL IPRATGHLYG  420
NLQHMPTIGS ELALMLLNQS GQNLGNPLNC HQSSFSSIIQ NVKHGYIPPS TFGTSIGSIK  480
QEARPSNETQ QQLSTPNIQR SDQESYDVQP GIDSISAQEL NVAREQRNAD SYSSQSISGQ  540
NSKGEPRNKT RRSKKGQSRK TISDKSELSS VPSQICDDQQ HDSEAKLEAE HANCGNIEDS  600
SGTLTKGNFA GDLQVQQVEQ HELMSAPKLE SSKSPDEGKS VSSFPNQGCF SQFFEGLDWM  660
TQSSYYQDSN GIQSVSASEN IFDPSADMPS TINGDNMEAF QNSCLSECFP SSIQEFVSTP  720
ELNSLTFLSP EMQHLDVQHD GSNLPSTSNS YVQMSFSEES GNQSASLSGL HMEAIHISNS  780
SCSHPMTTEG FDAGMFSKLP NLKESQVLPL QEIHSSSMGT PSCSMDVAEY SMDRSVKPMK  840
PPVRTYTKVQ KVGSVGRSID VTRFRDYHEL RSAIASMFGL QGKLEHPGSS DWKLVYVDYE  900
NDVLLVGDDP WEEFINCVRC IRILSPSEVQ QMSENGVHVL NDCIQIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.01737531390Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462860392
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699862.10.0auxin response factor 11 isoform X1
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A3L6Q5T40.0A0A3L6Q5T4_PANMI; Auxin response factor
STRINGSi021121m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]